| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1528 |
|---|
| Symbol | |
|---|
| ID | 7973127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1645850 |
|---|
| End bp | 1647223 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792127 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002943445 |
|---|
| Protein GI | 239814535 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTCA GAGAACAGCT CAATGCGATC GAAGCCGCGC CGGTCGCGCG CGCGCCGGCG
CCACCTGTGA CCGACGGGGC ACTTTCATCC TTTGCTTCGG ACTCTTATAA GCTCCTGAAG
GAGCGAATGC ACCTGAAGCT GCTGGACCGG TTCGACTTGG CGGTGCTCGA AACGCTGAAG
CCCGAGGTGC TGCGCCAGGA GATTTCCACC ATGGTCGCGC GGCTGCTGCA AGAAGAGCCC
GAGGCGCTGA ACGACATCGA GCGGCGCATG CTGATCCGCG ACATCCAGCA CGAGATGCTC
GGCTTCGGCC CGATCGAGCT GCTGATGGCC GACCCGACGG TGTCGGACAT CCTGGTCAAC
TCGCACGACC AGGTCTACGT GGAGCGCAGG GGCCGGCTGG AGCTGACGGA CGTGAGCTTC
ACCGACGAGA AGCACCTGCT GCGCATCATC GACAAGATCG TCTCGCTGGT GGGGCGGCGC
ATCGACGAAT CGAGCCCCAT GGTCGATGCG CGGCTGCCGG ACGGGTCGCG CGTCAATGCG
GTGGTCGCGC CGGTGGCGCT GGACGGCCCG ATGATGTCGA TTCGCCGCTT CGCGAAGATC
CCGCTGAAGA TGGAGAACCT GGTGAACGAC CTGAAGACGC TGACGCCTCA GATGGGGCTG
ATGCTCGAAG GGCTGGCCAG CGCGAAGATC AACATGCTGA TCTCCGGCGG CACCGGCGCC
GGCAAGACGA CGCTGCTGAA CATTCTCTCG GGCTTCATTC CCGCCACCGA ACGCATCATC
ACCATAGAGG ACGCGGCCGA GCTCCAACTG CAGCAGCCGC ACGTGGCCCG CATGGAAACC
CGGCCGATGA ACATCGAAGG CAAGGGCGAG ATCACGCAGC GCGCGCTGGT GCGCAATGCG
TTGCGCATGC GGCCCGACCG CATCGTGATT GGCGAGGTGC GCGGTGCCGA GGCGGTCGAC
ATGCTGCAGG CCATGAACAC CGGCCATGAA GGCTCGCTGA CCACCATCCA CGCCAACAGC
CCGCGCGACG CGCTGGCGCG GCTGGAGAAC ATGATCAGCA TGGCCAACCT GAACCTGCCG
CACCACTCGG TGCGCCAGCA GATCGCGTCG GCCATCACGG TGGTGATCCA GGTTCTGCGC
ATGGTCGACG GGCGGCGCAA GGTCACCAGC ATCCAGGAGA TCACCGGCAT GGAAGGCGAG
GTGGTCACGA TGCAGGAGAT CTTCGCGTTC CGCCAGACCG GCATGGGCCC CGACGGCCGG
GTGCGCGGCT ACTTCCATGC CACCGGCGTG CGGCCGAAGT TCGTCGAGCG CCTGCACTCC
TTCGGGGTGG TGCTGCCCGA CACCATGTTC GATCCCGACA AGCACTACGA ATAG
|
|---|
| Protein sequence | MSFREQLNAI EAAPVARAPA PPVTDGALSS FASDSYKLLK ERMHLKLLDR FDLAVLETLK
PEVLRQEIST MVARLLQEEP EALNDIERRM LIRDIQHEML GFGPIELLMA DPTVSDILVN
SHDQVYVERR GRLELTDVSF TDEKHLLRII DKIVSLVGRR IDESSPMVDA RLPDGSRVNA
VVAPVALDGP MMSIRRFAKI PLKMENLVND LKTLTPQMGL MLEGLASAKI NMLISGGTGA
GKTTLLNILS GFIPATERII TIEDAAELQL QQPHVARMET RPMNIEGKGE ITQRALVRNA
LRMRPDRIVI GEVRGAEAVD MLQAMNTGHE GSLTTIHANS PRDALARLEN MISMANLNLP
HHSVRQQIAS AITVVIQVLR MVDGRRKVTS IQEITGMEGE VVTMQEIFAF RQTGMGPDGR
VRGYFHATGV RPKFVERLHS FGVVLPDTMF DPDKHYE
|
|---|
| |