| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1519 |
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| Symbol | |
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| ID | 7973118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1639741 |
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| End bp | 1641255 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792118 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_002943436 |
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| Protein GI | 239814526 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAACATC TCTCTTCTTC TTCTTATTCA CCCGCCTGGC TGCTGGCGGC ACTCATGGCG
CTGGCGGCAC CCGCGATGGC CGCGGACGCG GTCCCGGCGG CGGCGGCTGC CGTTGCCGCA
ACCCCGGCCG CAGCGCCGGC CGGGCCCGCC ACCCGGCGCT GCACCGCGAT CATCCCGGAC
GACCAGCCGA CCTACGCCGT GCTCGGCAAG TCGGTGGTCA TCCCGCTGAA GGCACGCGTT
GCGCGCATCG TGGTCAGCGG CCAGCCGCCC AGCCGCGCGC CGGCCGCAGC ACCCGCAGCC
GCAGGGCAGC CGGCACCGGC CCCCGCCACG GCGGCGAACG CGGGCGACGG CATCGCCGAT
GTCGACGTCA CGCTGCTGAG CCCGACCGAC CTGTTCTTCC GCGGCCGCCA GGCGGGCTCG
ATGAACGTCG TGCTGCAAAG CGTCGACGGC ACCTGCTACA TCAAGGACGT GATCGTCACC
ATCGATCCGG GCGCGCTGCA GTCCAAGCTC GCCGAACTGA TGCCGGAAGA AAACCACATC
CGCGTGCGCA GCGCCGAGAA ATCGATCGTG CTCACCGGCG AGATCAGCGA TGCGCTCAAG
CTCGACGACG TGATGAGCCT GGCCATGGCC TACGGCGCCG ACGGCAAGAA GGTGGTGAAC
CTGCTGCGCG TGACGGCGCC GCAGCAGGTG ATGCTCGAAG TGAAGATCGC AGAGGTCAGC
AAGACGCTGC TGGACCGGCT CGGCGCGCGC GTGGGCCTGA GCCGCACGGG CGGTGGCGGC
CGCGACAGCT ACTCGCTGAT CTCCAGCTTC CTGAGCGGAG GCGGCGGCCT GCTCGAGGCG
ATCAGGATCG GCCGCACCTC GGTCGGCATC GACGGCCAGA AGGACGACGG CCTGGTGCGC
ATCCTGGCGG AGCCCAACAT CATGGCCATC AGCGGCCAGC AGGCGAGCTT CCTGTCGGGC
GGAAAGATCT TCATCCCGGT CGCGCAGAGC GCCGCCGGCG GCGGGGGAAC CAACATCACG
CTGGAGGAGA AGGAGTTCGG CATCGGGGTC AAGTTCACCC CGACCGTGCT CAACGGCGGA
CGCGTCAACC TCAAGATGAT CTCGGAGGTG TCGGACCTGT CGCAGACCGG CTCGCCCTTC
ACCACCGTGA CCGGCGTGAC CGCCGTGCTG CCTTCGCTGA CGGTGCGCCG CGCCGACACC
ACCGTGCAGC TCAACGACGG CCAGAGCTTC GTCATCGCGG GGCTCATCAA GAGCAACGTC
ACCGAATCCA TCAAGCGCTA CCCCGGACTG GGCGAAGTGC CGGTGATGGG GGCTCTGTTC
CGCAGCACCG AGTTCCAGAA CGACCAGACC GAACTGATGT TCGTGATCAC GCCGCGCCTG
GTGCGCCCGC TGGCCGAGGC CCCCCGTGTT CCAACCGACA ACCACGTCGT TCCCAGCCGC
GCCGAGGTCT ACCTGAACGG CAGCCTCGAA AGCGCCACCC CGGCACCGGT TGCACCGGCC
GGCCAACCCC AATGA
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| Protein sequence | MQHLSSSSYS PAWLLAALMA LAAPAMAADA VPAAAAAVAA TPAAAPAGPA TRRCTAIIPD
DQPTYAVLGK SVVIPLKARV ARIVVSGQPP SRAPAAAPAA AGQPAPAPAT AANAGDGIAD
VDVTLLSPTD LFFRGRQAGS MNVVLQSVDG TCYIKDVIVT IDPGALQSKL AELMPEENHI
RVRSAEKSIV LTGEISDALK LDDVMSLAMA YGADGKKVVN LLRVTAPQQV MLEVKIAEVS
KTLLDRLGAR VGLSRTGGGG RDSYSLISSF LSGGGGLLEA IRIGRTSVGI DGQKDDGLVR
ILAEPNIMAI SGQQASFLSG GKIFIPVAQS AAGGGGTNIT LEEKEFGIGV KFTPTVLNGG
RVNLKMISEV SDLSQTGSPF TTVTGVTAVL PSLTVRRADT TVQLNDGQSF VIAGLIKSNV
TESIKRYPGL GEVPVMGALF RSTEFQNDQT ELMFVITPRL VRPLAEAPRV PTDNHVVPSR
AEVYLNGSLE SATPAPVAPA GQPQ
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