| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1518 |
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| Symbol | |
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| ID | 7973117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1638876 |
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| End bp | 1639718 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792117 |
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| Product | Flp pilus assembly protein CpaB |
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| Protein accession | YP_002943435 |
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| Protein GI | 239814525 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA TCAAGGCGCT CGGGCTGCTT CTGCTGGCCC TCCTGACCGG CCTGGCGGCC
GCGGTCTACG CAGCGGGCTG GGTCTCCCGG CAGGGCGGAA TCGCATCCAA CAAGGTGGTG
GTGGCAGCGG TCGACATCGA ACTGGGCAGC CGGGTCAATC CGCAGATGCT GTCGCTGGTC
GACTGGCCGA GCGGCTCGCT GCCGGCCGGC TCGTTCAAGG ACGCCAAGTC GCTGGAGGAC
CGCGTGGTCA AGGTCGGCGT GCTGCGCGGC GAGGCCATCC TGGAAGGCAA GCTCGCGCCG
GTCGGCACCC AGGGCGGGCT CTCGGCGGTC ATTGCGAGCG GCAAGCGCGC CATGACCGTG
CGGGTCAACG ACGTGGTGGG CGTGGCGGGC TTCGCGCTAC CGGGCAACTA CGTCGACGTG
ATGGTCAACG CGCAGCAGGA CAAGAACCGC GGCGAAGAAG GCCGCCAGAT CAGCAAGACC
GTGCTCGAGA AGGTGCTGGT GCTGGCGGTG GCGCAGGAAG CCAACCGCGA CGACACCAAG
CCGAAGGTGG TCAGCGCCGT GACGCTTGAG CTTTCGCTCG AAGACTCCGA AAAGCTCGAC
CTGGCACGCA GCGTGGGAAC CCTCTCGCTG GTGCTGCGCA ACCAGATGGA CAAGACCACG
GTTGCCACCG CAGGCATCAC CAAGGGCCAG CTGTTCGGCG AGAAGGACAT CCTGCCGATC
TCCACCACCG TGGCAGCGCG GCCGGCCCCC GCGCGCATGC CGCGCACCGC CCCCATGGCG
CAGCGGCAAT CCGAGTGCGT GGAAGTGATC CAGCACGCAG CCCGCACGCT CAACTGCTTC
TGA
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| Protein sequence | MKNIKALGLL LLALLTGLAA AVYAAGWVSR QGGIASNKVV VAAVDIELGS RVNPQMLSLV
DWPSGSLPAG SFKDAKSLED RVVKVGVLRG EAILEGKLAP VGTQGGLSAV IASGKRAMTV
RVNDVVGVAG FALPGNYVDV MVNAQQDKNR GEEGRQISKT VLEKVLVLAV AQEANRDDTK
PKVVSAVTLE LSLEDSEKLD LARSVGTLSL VLRNQMDKTT VATAGITKGQ LFGEKDILPI
STTVAARPAP ARMPRTAPMA QRQSECVEVI QHAARTLNCF
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