| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1509 |
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| Symbol | |
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| ID | 7973107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1633463 |
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| End bp | 1634224 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792107 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943426 |
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| Protein GI | 239814516 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCCA CGCCGCCACC GCTTGCCGGC CAGGCCGCAT TCGTGACCGG AGCGGGGCAG
GGCCTGGGCG CCGCCATTGC GCGCGGGTTG GCCGAAGCGG GTGCGCGCGT GGTGCTTGCC
GATGTCGACG CAGGCAGCGC CGAATCCGTG GCCGCGGGCC TGCGCGCCGC GGGCGCCGAT
TGCGTCGCCA TGGAACTCGA CGTGCGCAGC GAGCCGGCGT TCGTACGCTG CTTCGAGGCG
GCCGTGGCCC GCTTCGGCGC CATCGACCTG CTGGTCAACA ACGCCGCGCG CACGCCGTTC
ACCTCGCCCT GGGACATCAC GCCCGACGAG TGGGACGACG TGCTGGCCGT CAACCTGCGC
GGCAGCTTCT TCGGCTGCCG CATTGCCGGG CGGCACATGC GCGAGTGCGG GTCCGGGCGC
ATCGTCAACC TGGCGTCGCT GGCGGGCCAG CAGCCCAGCG CCGCAACCGG CGTGCACTAT
GCGGCCAGCA AGGCGGCGCT GCTGGCACTG ACGCGCAGCT TCGCGCAGGA ACTCGCACCG
CATGGCGTCA CGGTGAATGC ACTGGCGCCG GCGGCGGTTC GCAGCCCCGC GCTCGATGCA
TTGGACCCGG CGCGGCAGCA GGCGCTGAAG GCCGCCATTC CGCTCGGCCG CTTCGGCGAG
GCCGAAGAGG TGGCGGCCGC CGTCGTCTAC CTCGCTTCGC CCGCGGCGGC CTTCATGACG
GGCGCCACGC TGGACCTCAA CGGCGGCCGT TTCATGCGCT GA
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| Protein sequence | MSSTPPPLAG QAAFVTGAGQ GLGAAIARGL AEAGARVVLA DVDAGSAESV AAGLRAAGAD
CVAMELDVRS EPAFVRCFEA AVARFGAIDL LVNNAARTPF TSPWDITPDE WDDVLAVNLR
GSFFGCRIAG RHMRECGSGR IVNLASLAGQ QPSAATGVHY AASKAALLAL TRSFAQELAP
HGVTVNALAP AAVRSPALDA LDPARQQALK AAIPLGRFGE AEEVAAAVVY LASPAAAFMT
GATLDLNGGR FMR
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