Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1506 |
Symbol | |
ID | 7973104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1629268 |
End bp | 1631055 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644792104 |
Product | ABC transporter related |
Protein accession | YP_002943423 |
Protein GI | 239814513 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.55626 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCGA ACTCCAAACG CATGGCATGG ATCGCGGCGG TGGTCGCCGT GCTGGCCCTG GTGCCGGCGG TGGCGGGCAG CTTCACGGTC TCGCTGCTCA ACGACATCGG CATCGGTGCG CTGGTGGCGC TCGGGCTGGT GCTGCTCACC GGCGTGGGCG GCGCGACCTC GTTCGGGCAG GCGGCCTTCG TAGGCATCGC GGCCTACGCC ACGGCCTGGC TCACCACCAC GCAGGGCTTG TCGCCATGGA TCGGGCTCTT GTTCGCGCTG CTGCTCACGG GCCTATCGGC GCTGGCCATC GGCATGCTCA CGCTGCGGCT GGGCGGGCAC TTCCTGCCGC TCAGCACCAT CGCCTGGGGC CTGTCGATCG CGATGCTGTT CGGCAATGTC GATGCGCTCG GGCGCCACAC GGGCCTGTCG AACATTCCGG CGCTGCGCAT CGCGGGCTGG TCGCTGGCCG ATCCGCGTTC GATGTACTAC CTGATCTGGG TGGTGGTCGG GCTGGCCTGC CTGTTCAGCC ACAACCTGCT GCAGTCGCGG CCGGGGCGCG CGATTCGGGG CTTGCGCGGC GGTGCCACGC TGCTCGCGAG CGTGGGGGCC GACGCCTACC GCGTGCGGCT CACGCTGTTC GTCACGGCCG CGCTCTTCGC GGGGCTGGCG GGCTGGCTCT ATGCGCACAT GAACCGCTTC GTGAGCCCGT CGCCCTTCGA CGTGCGCGCG AGCATCGAGT ACCTGCTGAT GGCGGTGGCC GGCGGGCTCG GGCAGCTGGC CGGCGCGCTG GTAGGCGCCG CGCTGGTGCT GGTGCTCAAG AACGGCCTGC AGGACGTGCT GCCGATGCTC ACGCAGCGCG CGGGCCAGCT GGAGGCCGTG GCCTTTGCGA CGCTCTTCAT CCTGCTGCTG CACTTCGCGC GCGGCGGCCT CATGGGCCTG CTGCGGCGCT GGGCGCGCCG CCGCGCCGGC ACGCAAGCTG CCTCGCGCCA CGAGGCGCCC GCGGTCGATC CGCTGCCGCA CCGTCAGCTG CCCGCGCGCG GCACGCAGGT GTTGTCGGTG AAAGGCGTGG TCAAGCGCTT TGGCGGGCTG GTGGCGGTCA ACGACGTGAG CTTCGAAGTG AACGCGGGCG AGATCGTGGG CCTGATCGGG CCCAACGGCG CGGGCAAGTC GACCATGTTC AACCTGCTGA CCTGCACGCT GCCGATGAGC GCGGGCCAGG TGCGCTTTCT CGACCACGAC ATCGCCGGCA TGCCGCAGCG GCAGGTGGCG CGGCTGGGCT TGGCGCGCAC CTTCCAGCAC GTGAAGCTCA GGCCGCACAT GAGCCTCTTG GACAACGTGG CGCTGGGCGC GCATTCGCGC ACGCGCTCGG GCATCCTGAA GGCGGGCCTG CGGCTGGACC GCAAGGAAGA GATGCAGATC CTGCAGGAGG CGCAGCGCCA GCTCGACCGC ATCGGCCTGG GCGACCGCGC GCACGAGCTC GCGGGCAGCC TGCCACTGGG CACTCAGCGC ATCCTGGAGA TTGCGCGTGC GCTGGCCGCC GACCCGGTGC TGCTGGTGCT CGATGAGCCC GCGGCGGGCC TGCGCCGCAA GGAAAAGATG GCGCTCGGCG ATCTGCTGCG CAAGCTGCGC GAGGAGGGTG TGACCATCCT CATCGTCGAG CACGACATGG ACTTCGTGAT GAAACTGGTG GACCGTCTGG TGGTGATGAA CTTCGGCTCC AAGCTCGTGG AGGGCGTGCC GTCGGCGGTG CGCGCCGACG AGCGCGTGCA GGCGGCTTAC CTGGGGAGCG TGGTATGA
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Protein sequence | MSANSKRMAW IAAVVAVLAL VPAVAGSFTV SLLNDIGIGA LVALGLVLLT GVGGATSFGQ AAFVGIAAYA TAWLTTTQGL SPWIGLLFAL LLTGLSALAI GMLTLRLGGH FLPLSTIAWG LSIAMLFGNV DALGRHTGLS NIPALRIAGW SLADPRSMYY LIWVVVGLAC LFSHNLLQSR PGRAIRGLRG GATLLASVGA DAYRVRLTLF VTAALFAGLA GWLYAHMNRF VSPSPFDVRA SIEYLLMAVA GGLGQLAGAL VGAALVLVLK NGLQDVLPML TQRAGQLEAV AFATLFILLL HFARGGLMGL LRRWARRRAG TQAASRHEAP AVDPLPHRQL PARGTQVLSV KGVVKRFGGL VAVNDVSFEV NAGEIVGLIG PNGAGKSTMF NLLTCTLPMS AGQVRFLDHD IAGMPQRQVA RLGLARTFQH VKLRPHMSLL DNVALGAHSR TRSGILKAGL RLDRKEEMQI LQEAQRQLDR IGLGDRAHEL AGSLPLGTQR ILEIARALAA DPVLLVLDEP AAGLRRKEKM ALGDLLRKLR EEGVTILIVE HDMDFVMKLV DRLVVMNFGS KLVEGVPSAV RADERVQAAY LGSVV
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