Gene Vapar_1505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1505 
Symbol 
ID7973103 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1628216 
End bp1629271 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content69% 
IMG OID644792103 
Productinner-membrane translocator 
Protein accessionYP_002943422 
Protein GI239814512 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.122982 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATGGG ACGTGGCGCT GATTCTCGTC ACCGATGGCC TGGCCAACGG TGCCGTCTAT 
CTGCTGGCAG GGCTCGGGCT GGTGCTGATC TTTTCCGTCA CGCGGGTGGT GTTCGTGCCG
TTCGGCGACA TCGCGGCCTT TGCGGCGCTG TCGCTCGCGG CCTTCGAAAC CGGCCGCGTC
CCGCCGACCA TCGGCATGGT CGCCGTGCTT GCGGCGCTCG CGCTGGCAAC GGAGATCGGC
AGCCTGCTGC GGCGCGGCGA GGCCGCGCGC ATACCCAAGG CGTTGCTGAT GTGGGGCGTG
CTGCCTGCGA TTCCGTGTGT GCTGGCCTGG CTGGCGGCGC GGCCCGGCGT GCCGGTGGCG
GTGCACATTG CCGTGGCGGT GCTGCTGGTG GTGCCCATTG CGCCGCTGCT CGCGCGGGTG
GTGTTCCAGC CGATCGCGGA TGCCTCGGTG CTGGTGCTGC TGATCGTGTC GCTGGCGCTG
CACTTCCTGC TGTCGGGACT GGGCCTCCTG TTCTTCGGAC CTGAAGGCTC GCGCACCACG
CCGCTCACCA GCGCGGTGTT CACGCTCGGC GACGGCTTCA CGGTCAGCGG CCAGGTGGTG
CTGATGGTGG GGGTGGCCAT CGTGCTGAGC GGCCTCTTCT TCCTGGTGTT CGAGCGCACG
GTGGCCGGCA AGGCGCTGCG CGCCACGGCC GTCAACCGCG TGGGCGCGCG GCTGGTCGGC
ATCCGGCCGG TGCGCACGGC GCTGCTGGCC TATGGCTGCG CCTCCCTGCT GGCCGGCCTC
ATCGGCGTGC TGATCGCGCC GGTGACCACC ATGTACTACG ACTCGGGCTT CATCATTGGT
CTCAAGGCCT TCGTGGCCGC GATCATCGGC GGGCTCGTGA GCTACCCGAT GACCGCCGTG
GGCGCGCTTG CCGTGGGCGT GGTGGAAAGC TTCGCCTCCT TCTGGAGCGG GGCGCTGAAG
GACGTGATCG TGTTCAGCCT GCTGATCCCG GTGCTGATGC TCAGGTCGTT CATGGCGGCC
CATGCCGAAG AGGAAGAAGA CGAGGTGGAC CAATGA
 
Protein sequence
MTWDVALILV TDGLANGAVY LLAGLGLVLI FSVTRVVFVP FGDIAAFAAL SLAAFETGRV 
PPTIGMVAVL AALALATEIG SLLRRGEAAR IPKALLMWGV LPAIPCVLAW LAARPGVPVA
VHIAVAVLLV VPIAPLLARV VFQPIADASV LVLLIVSLAL HFLLSGLGLL FFGPEGSRTT
PLTSAVFTLG DGFTVSGQVV LMVGVAIVLS GLFFLVFERT VAGKALRATA VNRVGARLVG
IRPVRTALLA YGCASLLAGL IGVLIAPVTT MYYDSGFIIG LKAFVAAIIG GLVSYPMTAV
GALAVGVVES FASFWSGALK DVIVFSLLIP VLMLRSFMAA HAEEEEDEVD Q