| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1499 |
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| Symbol | |
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| ID | 7973097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1621733 |
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| End bp | 1622455 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792097 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943416 |
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| Protein GI | 239814506 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.685954 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGG TTGCAGCAGT GACGGGCGGC AGCGCCGGCA TTGGCAAGGC CATCTGCGAA
GACCTGCTCG CGCAGGGCTA CGAGGTGGTC TCGCTCGCGC GCCGCAAGGC CGGCATCGAG
CATCCGAAGC TGCACAGCAT CGAGGTCGAC CTGAGCGATC GCGCCGCCAC CGGCGAGGCG
GTGCGCGAAC TGGTCGAGCG TTTCGCTCCC ACCACCATCG TCCACAACGC CGGCGTGATC
CGCGCAGCCT TGCTGCCCGA CGTGAAGCTC GGCGATCTCG ATGCGCTGGT CGACCTGCAC
CTGGCCTCCG CGATCCAGCT GGTGCAGGGC GCATTGCCTG CGATGCGTGC GCAGCGCTTC
GGCCGCGTGG TGCTGCTGTC GTCGCGCGCC GCGCTGGGCC TGGCCACGCG CACCAGCTAC
TCCGCGACCA AGGCCGGCAT GCTGGGCATG GCACGCACCT GGGCGCTCGA ACTTGCCGCG
GACGGCATCA CCGTGAACGT GGTGGCGCCG GGCCCGATCC GCACCGACAT GTTCTACGAC
GTGGTCGAGG CCGGCAGCGA GAAGGAGCGC GCACTTGCCG CCTCCGTGCC CGTCAAGCGC
CTTGGCGAAT CGGCCGACGT GGCACGCGCC GTGCGGTTCT TTGCCGACCC CGACAGCAGC
TTCATCACGG GCCAGGTGCT CTACGTCTGC GGCGGCACCA GCGTCGGCAG CCTTGCTCTC
TAG
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| Protein sequence | MNKVAAVTGG SAGIGKAICE DLLAQGYEVV SLARRKAGIE HPKLHSIEVD LSDRAATGEA
VRELVERFAP TTIVHNAGVI RAALLPDVKL GDLDALVDLH LASAIQLVQG ALPAMRAQRF
GRVVLLSSRA ALGLATRTSY SATKAGMLGM ARTWALELAA DGITVNVVAP GPIRTDMFYD
VVEAGSEKER ALAASVPVKR LGESADVARA VRFFADPDSS FITGQVLYVC GGTSVGSLAL
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