Gene Vapar_1484 details

Gene Information

• Locus tag: Vapar_1484
• ID: 7973082
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1603559
• End bp: 1605544
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644792082
• Product: DEAD/DEAH box helicase domain protein
• Protein accession: YP_002943401
• Protein GI: 239814491
• COG category: [J] Translation, ribosomal structure and biogenesis; [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG0513] Superfamily II DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.104154
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTTAA CCACCAACGG GGCGCCGCCT ACGGCAGCGC TCGCGTTTGA GATTGATATT 
CACATGACCG ACGCTTTTGA AGCGCAGGGC GAGTTCGCGC CTGTGCAATC CACCAACAAC 
AACGAATTCA TCGCCGCCCC GGACACCGTG TCCGAAGCGC CGATCCTCGA GGCGCTCGAC 
GCCGCAGCGC CCGAAGCGGC CGCGGCCGAA GAAGCCCGCG TGCCCAACGG CTTCATCAAG 
CTCGGCCTCG CGCCCGAACT GATCGCCGCC GTGGCCGACC TGGGCTTCAC CCAGCCCACC 
ACCGTGCAAG ACAAGGTGAT CCCGCTCGCC ATGGGCGGTG AAGCCGGCCA GGACGGCAAG 
GCCCGTTTTG TCGACCTGAT GGTTTCGAGC CAGACCGGCT CGGGCAAGAC CGCCGCCTTC 
CTGCTGCCCG TGCTGCACAC CCTGCTCAAG CGCCAGGCCG AGGCCGAAGC GCAAGCCAAG 
GCCGAATTCC AGCGCCTGGC CGCCGAAGCC GCCGCGCGCG GCGAAGCCGT GCCGAAGAAG 
CCCAAGCGCA AGGACCCGAC CAACGCCCGC CATTTCAAGG CCGCCACGCC CGGCGCCCTG 
ATCCTGTGCC CGACGCGCGA ACTCGCGCAG CAGGTCGCGC ACGACGCCAT CGAGCTGGTT 
CGCCACTGCC GCGGCCTGCG CGTGGCCAAC GTGGTGGGCG GCATGCCCTA CCAGCTGCAG 
ATCGCCAAGC TGCAGAACGC CGACCTCGTG GTGGCCACGC CCGGCCGCCT GCTCGACCTG 
CAGCGCTCGA TGCAGATCAA GCTCGACCAG GTCAAGTTCC TGGTGGTCGA CGAAGCCGAC 
CGCATGCTCG ACCTCGGCTT TGCCGACGAC CTGGCCGAAG TCAACCAGCT CACCATCGAG 
CGCCAGCAGA CCATGATGTT CAGTGCCACC TTCGCGCCGC GCATCCAGCA GCTGGCCCAG 
CGCGTCATGC GCGAGCCGCA GCGCATCACC ATCGACAGCC CGCAAGAGAA GCACGCCAAC 
ATCAAGCAGT CGCTGTACTG GGCCGACAAC AGCCAGCACA AGCGCAAGCT GCTCGACCAC 
TGGCTGCGCG ACACCAGCAT CAACCAGGCG ATCGTGTTCG CGAGCACCCA GGTCGAGTGC 
GACGGCCTCG CCAACGACCT GCAGCAGGAC GGCTTCAGCG CCGTGGCGCT GCACGGCGCC 
CTGAGCCAGG GCCTGCGCAA TCGCCGCCTG ATGGCGCTGC GCCAGGGCCA GGTGCAGATC 
CTGGTGGCCA CCGACGTTGC CGCCCGCGGC ATCGACGTGC CCACCATCAC CCACGTCTTC 
AACTTCGGCC TGCCGATGAA GGCCGAGGAC TACACCCACC GCATCGGCCG CACCGGCCGT 
GCCGGCCGCG ACGGCCTGGC CATCACCTTT GCCGAGTTCC GCGATCGCCG CAAGATCATG 
GACATCGAGC AGTACAGCCG CCAGCAGTTC AAGGCCGAAG TGGTGGCCGG CCTCGAGCCG 
CAGCAGCGCA TGCCGCAATC GCGCCCGCCC ATGGGCGAGT ACCGCGGCGG CCGTGGCGAC 
AACCAGTCGC GCGACCGCAA GTTCGGCAAT GGCGGCGGCG GTGGCTACCG CGGCAACAAC 
GGCGGCGGCT ATGCCGGCGC CAGCGGCTTC AACGACCGCA ACGCCCGTGG TCCGGCGCAG 
GGCCAGGGCC CGCGCGGCTT CCAGGGCGGC AACAACGCCG GCTTCGGCGG CGGCCGTGAC 
GACGGCGGCA ATGGCGGCGG CGCCGGCTAC GGCCGCAAGC CGGGCTGGGG CGACAGCGCC 
CCGCGCGGCG GCCACGGCCA GGGCCACCAC GGCGGTGGCC GCGGCGACGG CGGCTTCGCG 
CCCCGCGAAG GCTTTGCTCC GCGCGAAGGT TTTGCACCGC GCGGCAATGG CGCAGGCCAT 
GGCGGCCCGG GCAAGGTGTT CGTGCCGCGC GACGCACAGA AGCGTGCGTT CAAGCCCACG 
CGCTGA 

 

Protein sequence

MFLTTNGAPP TAALAFEIDI HMTDAFEAQG EFAPVQSTNN NEFIAAPDTV SEAPILEALD 
AAAPEAAAAE EARVPNGFIK LGLAPELIAA VADLGFTQPT TVQDKVIPLA MGGEAGQDGK 
ARFVDLMVSS QTGSGKTAAF LLPVLHTLLK RQAEAEAQAK AEFQRLAAEA AARGEAVPKK 
PKRKDPTNAR HFKAATPGAL ILCPTRELAQ QVAHDAIELV RHCRGLRVAN VVGGMPYQLQ 
IAKLQNADLV VATPGRLLDL QRSMQIKLDQ VKFLVVDEAD RMLDLGFADD LAEVNQLTIE 
RQQTMMFSAT FAPRIQQLAQ RVMREPQRIT IDSPQEKHAN IKQSLYWADN SQHKRKLLDH 
WLRDTSINQA IVFASTQVEC DGLANDLQQD GFSAVALHGA LSQGLRNRRL MALRQGQVQI 
LVATDVAARG IDVPTITHVF NFGLPMKAED YTHRIGRTGR AGRDGLAITF AEFRDRRKIM 
DIEQYSRQQF KAEVVAGLEP QQRMPQSRPP MGEYRGGRGD NQSRDRKFGN GGGGGYRGNN 
GGGYAGASGF NDRNARGPAQ GQGPRGFQGG NNAGFGGGRD DGGNGGGAGY GRKPGWGDSA 
PRGGHGQGHH GGGRGDGGFA PREGFAPREG FAPRGNGAGH GGPGKVFVPR DAQKRAFKPT 
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