Gene Vapar_1483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1483 
Symbol 
ID7973081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1602792 
End bp1603388 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content64% 
IMG OID644792081 
Productoligoribonuclease 
Protein accessionYP_002943400 
Protein GI239814490 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0135513 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGAAT CCCTTGACCC CACGACCGTC GCAACCCTCC CCGTCCTCAA GAAAAGCGAC 
CAGAACCTGG TCTGGCTCGA CTGCGAAATG AGCGGCCTCG ACCCCGAGAA GGAGCGCCTG 
CTCGAGATTG CCGTGGTCGT CACCGGCCCC GACCTCACGC CCCGCATCGA CGGCCCCGTG 
CTGGTCATCC ACCAGAGCGA CGCGGTGCTC GACGCCATGG ACGCCTGGAA CAAGGGCACG 
CACGGGCGCA GCGGCCTGAT CGACAAGGTG AAGGCCTCGA CGCTGGACGA AGCCGCGGCC 
GAGCAGCAAC TGCTGGAATT CGTGGCCCGC TATGTTCCCA GGAGCGGTTC GCCCATGTGC 
GGCAACACCA TCGGGCAGGA CCGGCGCTTC CTGGTCAAGT TCATGCCCAA GCTGGAGGCG 
TACTTCCACT ACCGCAACCT CGATGTCAGC ACCCTGAAGG AGCTGGCCAA GCGTTGGAAG 
CCCTCCGCCT ACAGCGCCTT CAAGAAGCAG CAGGCGCACA CTGCGCTGGC CGACGTGCAC 
GAGTCCATCG AGGAGCTCGC GCACTACAGG GAAACCTTTC TCAAATTGAC GGATTAG
 
Protein sequence
MSESLDPTTV ATLPVLKKSD QNLVWLDCEM SGLDPEKERL LEIAVVVTGP DLTPRIDGPV 
LVIHQSDAVL DAMDAWNKGT HGRSGLIDKV KASTLDEAAA EQQLLEFVAR YVPRSGSPMC 
GNTIGQDRRF LVKFMPKLEA YFHYRNLDVS TLKELAKRWK PSAYSAFKKQ QAHTALADVH 
ESIEELAHYR ETFLKLTD