| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1475 |
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| Symbol | trmD |
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| ID | 7973073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1595872 |
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| End bp | 1596618 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792073 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_002943392 |
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| Protein GI | 239814482 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTCG ACGTCCTCAC GCTCTTTCCC GAACTGTTCG CGCCCTTCAT GGCCAGCGGC
GTGACGCGCC GCGCCTACGA ATCGAAGCAG GTCGAGGTCG TGCTCTGGAA CCCGCGCGAC
TTCGCGCAGG GCAACTACAA GCGCGTGGAC GACCGGCCCT TTGGCGGCGG CCCCGGCATG
GTGATGATGG CCGAGCCGCT GTCGGCCTGC CTCGACGCGG CGCTGGCCGC GCGCGGCTCG
CAGGCGCCGG TCGTGCTGTT CTCGCCCATT GGCGAGACTT TGCGCCACGA AGCGGTCGAG
CGCTGGTCGG CCAGCGAGGG CGCGGTGCTG GTCTGCGGCC GCTACGAAGG CATCGACCAG
CGCTTCATCG ACACGCGCGT GACGCACCAG GTCAGCCTCG GCGACTTCGT TCTCTCGGGC
GGCGAGATCG CGGCCATGGC GCTGCTCGAT GCCGTGGCGC GGCTGCAGCC CGGCGTGCTG
GGCGACGAGG CCAGCCATGT GCAGGACAGC TTCAATCCCT CGCTCGACGG CCTGCTCGAT
TGCCCGCACT ACACCCGGCC GGAGCAATGG AACGGGCAGG GCGTGCCGGC GCCGCTGCTG
TCGGGGCACC ACGTGCAGAT CGAGCGCTGG CGCCGCGACC AGCGCCTGGC CATCACGGCC
GCCCGGCGGC CCGACCTGAT TGCCGCCGCA CGCGCCGCCG GCCGCCTGAG CAAGGCCGAT
GAGGCGGTCC TGAAAAAAAA GCTATAA
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| Protein sequence | MRFDVLTLFP ELFAPFMASG VTRRAYESKQ VEVVLWNPRD FAQGNYKRVD DRPFGGGPGM
VMMAEPLSAC LDAALAARGS QAPVVLFSPI GETLRHEAVE RWSASEGAVL VCGRYEGIDQ
RFIDTRVTHQ VSLGDFVLSG GEIAAMALLD AVARLQPGVL GDEASHVQDS FNPSLDGLLD
CPHYTRPEQW NGQGVPAPLL SGHHVQIERW RRDQRLAITA ARRPDLIAAA RAAGRLSKAD
EAVLKKKL
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