Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1472 |
Symbol | |
ID | 7973070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1594313 |
End bp | 1594837 |
Gene Length | 525 bp |
Protein Length | 174 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644792070 |
Product | Phosphinothricin acetyltransferase |
Protein accession | YP_002943389 |
Protein GI | 239814479 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1247] Sortase and related acyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCTCA CCATCCGCCC CAGCCGCGAC CAAGACATCG CGGCCATCAC GGCCATCTAC GCCCACCACG TGCTGACCGG CACCGGCACC TTCGAGACCG AAGCCCCCTC CGCCGCCGAC ATGGCCGCGC GGCGCGCCGA CGTGCTCGGC AAGAACCTGC CCTACCTCGT GGCCGAAGAA GATGGCGAAG TGTTGGGTTT TGCCTACTGC AACTGGTTCA AGCCGCGCCC GGCCTACCGC TTTTCGGCCG AAGACTCGAT CTACATGTCC GAAGCCGCAC GCGGCAAGGG CCTGGGCGCC CAGCTGCTGG CCGCCCTCTC GCAGGCCGCC GAAGCGGTGG GCGTGCGCAA GCTGATCGCC GTCATCGGCG ATTCGGCCAA TGCCGGCTCG GTCGGCGTGC ACCGCAGCCA GGGCTTCACG CACGTGGGCG TGCTCAAGGA CTGCGGCTGG AAGTTCGGCC AATGGCGCGA CGTGGTCCTG ATGGAAAAGG TGCTCGGCGA AGGCAGCACC ACCCAACCCG AATGA
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Protein sequence | MTLTIRPSRD QDIAAITAIY AHHVLTGTGT FETEAPSAAD MAARRADVLG KNLPYLVAEE DGEVLGFAYC NWFKPRPAYR FSAEDSIYMS EAARGKGLGA QLLAALSQAA EAVGVRKLIA VIGDSANAGS VGVHRSQGFT HVGVLKDCGW KFGQWRDVVL MEKVLGEGST TQPE
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