Gene Vapar_1472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1472 
Symbol 
ID7973070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1594313 
End bp1594837 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content68% 
IMG OID644792070 
ProductPhosphinothricin acetyltransferase 
Protein accessionYP_002943389 
Protein GI239814479 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1247] Sortase and related acyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCTCA CCATCCGCCC CAGCCGCGAC CAAGACATCG CGGCCATCAC GGCCATCTAC 
GCCCACCACG TGCTGACCGG CACCGGCACC TTCGAGACCG AAGCCCCCTC CGCCGCCGAC
ATGGCCGCGC GGCGCGCCGA CGTGCTCGGC AAGAACCTGC CCTACCTCGT GGCCGAAGAA
GATGGCGAAG TGTTGGGTTT TGCCTACTGC AACTGGTTCA AGCCGCGCCC GGCCTACCGC
TTTTCGGCCG AAGACTCGAT CTACATGTCC GAAGCCGCAC GCGGCAAGGG CCTGGGCGCC
CAGCTGCTGG CCGCCCTCTC GCAGGCCGCC GAAGCGGTGG GCGTGCGCAA GCTGATCGCC
GTCATCGGCG ATTCGGCCAA TGCCGGCTCG GTCGGCGTGC ACCGCAGCCA GGGCTTCACG
CACGTGGGCG TGCTCAAGGA CTGCGGCTGG AAGTTCGGCC AATGGCGCGA CGTGGTCCTG
ATGGAAAAGG TGCTCGGCGA AGGCAGCACC ACCCAACCCG AATGA
 
Protein sequence
MTLTIRPSRD QDIAAITAIY AHHVLTGTGT FETEAPSAAD MAARRADVLG KNLPYLVAEE 
DGEVLGFAYC NWFKPRPAYR FSAEDSIYMS EAARGKGLGA QLLAALSQAA EAVGVRKLIA
VIGDSANAGS VGVHRSQGFT HVGVLKDCGW KFGQWRDVVL MEKVLGEGST TQPE