| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1461 |
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| Symbol | |
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| ID | 7971289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1584525 |
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| End bp | 1585520 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644792059 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002943378 |
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| Protein GI | 239814468 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.221991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCTCC AGCAGCAGCA AAAGCCCATC CGCGTAGTGT TCGTGCTGCT GCCGGGCAGC
CTGGTGCTCG ACTGGGCCGG CCCGGCCGAG GCGCTGCGCA TCGCGAACCA GCGGCTGCGT
GCGGCGGGCC AGCCCGAGCG CTTCGGGATC GAATTCGCCA GCCCGCGGCC CACGTCGATC
GGGTCGGTCG GCGTTGCGCT CGCCAGGCTC GCGCCCTTGC CGACGCAATG GCATGGCCCG
GCCTGGGTCG TGCTGGTCGG GCTGCCCGGA GACACCATCC CGATCGACAA CGCCGAGACG
CAGGAGCTGC TGCACTGGCT GCGCGGCCAG CGCTTCGAAC GCGACCGGCT CGAACTGGTC
ACGGTCTGCG CCGGTGCGCT GCTGGCCGCG CATGCCGGCG CGCTTTCGGG CCGCCGTGCG
ACCACGCACC ACCATCACCT GGACGAACTG CGCACGGCGG AGCCGCGCTG CGAGGTGGTC
GCCAACCGTG TGTTCGTGAT CGATCCGCCG GTGTACAGCA GCGCGGGCGT CACCACCGGC
ATCGACCTGG TGCTGCACCG CATCGCCGAC GTGTGCGGCG AAGCGCTGGC CGCCCAGGTG
GCGCAGACGA TGGTGGTGGC GCAGCGGCGC GGCCCGCACG ATCCGGAGCT GTCGCCCTTC
CTGGCCTACC GCAACCACCT GCATGCCGCG CTGCATCGCG TGCAGGACGC CGTCAGCGAG
CAGCCGCAGG CCGAGTGGAG CGTGCCGCAG ATGGCCGAAG TGGCCCATAC CTCGGCGCGG
CACCTGACGC GGCTGTTCGT CGAGCACGCG GGCGTGGCGC CGCTGGCCTA CCTGCGGCGG
CTGCGGCTGG CGGCCGCGCA GCTTGCGCTG GCGTCGGGCG CGAGCGTGAC GCGGGCGGCG
GAAATCTCGG GCTTCGGCTC GGACACGCAG CTGCGGCGCG CCTGGCACCA GTTCGGATTG
CCTGGCTCGC CCTCGGCTTC GGCATCGAAG GCGTAG
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| Protein sequence | MDLQQQQKPI RVVFVLLPGS LVLDWAGPAE ALRIANQRLR AAGQPERFGI EFASPRPTSI
GSVGVALARL APLPTQWHGP AWVVLVGLPG DTIPIDNAET QELLHWLRGQ RFERDRLELV
TVCAGALLAA HAGALSGRRA TTHHHHLDEL RTAEPRCEVV ANRVFVIDPP VYSSAGVTTG
IDLVLHRIAD VCGEALAAQV AQTMVVAQRR GPHDPELSPF LAYRNHLHAA LHRVQDAVSE
QPQAEWSVPQ MAEVAHTSAR HLTRLFVEHA GVAPLAYLRR LRLAAAQLAL ASGASVTRAA
EISGFGSDTQ LRRAWHQFGL PGSPSASASK A
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