| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1460 |
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| Symbol | |
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| ID | 7971288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1583185 |
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| End bp | 1584498 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792058 |
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| Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002943377 |
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| Protein GI | 239814467 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.498259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTGCTT CCGAGGGCCG CGGCGGCGGA GGTGGCGGGG CCGCCGTCCA CCGCAGCATC
GAGGCGGTGT GGCGCATCGA ATCCGCGAAG ATCATTGCCA CCGTCGCGCG CATGGTGCGC
GACGTGGGCC TGGCCGAGGA ACTGGCGCAG GACGCGCTGG TGTCGGCTCT GGAGCAATGG
CCCGAAAAAG GCGTGCCCGA CAACCCCGCC GCCTGGCTCA CGGCCGTGGC CAAGCGCCGC
GCGCTCGACC GGCTGCGCCA CCGGCAGCTG GCAGAGCACA AGGCGCCCGA GATCGGCCGC
GAGCTCGATG CGCAGCACGA GATGGCCCAG GCCGATTTCG CCGAAGCCGT CGATGCGGCC
ATCGACGACG ACATCGGCGA CGACCTGCTG CGGCTGGTCT TCACCGCCTG CCACCCGGTA
CTTTCGACCG AGGCGCGCGT GGCGCTCACG CTGCGCCTGA TGGGCGGCCT CGGCACCGAC
GAAATTGCGC GCGCCTTTCT CGTGCCCGAA GCCACCGTGG CGCAGCGCAT CGTGCGCGCC
AAGCGCACGC TGCTCGAAGC GCGCGTGCCC TTCGAGGTGC CGCGCCGACA TGAGCTCCAG
GCGCGGCTCG CCTCGGTGCT CGAGGTGCTC TACCTGATCT TCAACGAAGG CTACTCGGCC
ACGGCCGGCG ACGACTGGAT GCGCCCCGCG CTGTGCGAGG AAGCCATGCG CCTGGGCCGC
ATCGTGGCCG AGCTCATGCC CGATGCCTCG GAAGTGCATG GCCTGGTGGC GCTGATGGAA
ATCCAGGCCT CGCGCACGGC CGCGCGCGTG GGCGCCTCGG GCGAGCCGGT GCTGCTGCTC
GAGCAGAACC GCGCACGCTG GGATCACATG CTGATCCGCC GCGGCCTGGC GGCACTGGCG
CGCGCCGAGG CGCTCGGCGG TGCCTTCGGC CCCTATGCGC TGCAGGCGGC CATTGCCGCC
TGCCACGGCC GTGCACGCAC GGCCGAAGAA ACCGATTGGC CGCGCATCGC CGCGCTCTAC
GACGCGCTGG CCGAGCTGTC GCCGTCGCCC ATCGTCGAAT TGAACCGCGC GGTGGCGCTG
TCGATGGCTT TCGGGCCGGC TGCGGGGCTC GAGGTGGTGG ATGCGCTCGT GGGCGAGCCG
GCCTTGCAGG CCTACCACCT GCTGCCGGCG GTGCGCGGCG ACCTGCTCTT GAAGCTCGGC
CGCCGCGCCG AGGCGCAAAA GGAATTCGAC CGCGCCGCCT CGCTCACGCG CAACACGCGC
GAGCGGACCC TGCTGCTGGC GCGTGCGCGG GCCTGCGCGG CGGTGCAGGG CTGA
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| Protein sequence | MGASEGRGGG GGGAAVHRSI EAVWRIESAK IIATVARMVR DVGLAEELAQ DALVSALEQW
PEKGVPDNPA AWLTAVAKRR ALDRLRHRQL AEHKAPEIGR ELDAQHEMAQ ADFAEAVDAA
IDDDIGDDLL RLVFTACHPV LSTEARVALT LRLMGGLGTD EIARAFLVPE ATVAQRIVRA
KRTLLEARVP FEVPRRHELQ ARLASVLEVL YLIFNEGYSA TAGDDWMRPA LCEEAMRLGR
IVAELMPDAS EVHGLVALME IQASRTAARV GASGEPVLLL EQNRARWDHM LIRRGLAALA
RAEALGGAFG PYALQAAIAA CHGRARTAEE TDWPRIAALY DALAELSPSP IVELNRAVAL
SMAFGPAAGL EVVDALVGEP ALQAYHLLPA VRGDLLLKLG RRAEAQKEFD RAASLTRNTR
ERTLLLARAR ACAAVQG
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