| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1458 |
|---|
| Symbol | |
|---|
| ID | 7971286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1582304 |
|---|
| End bp | 1582732 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644792056 |
|---|
| Product | YCII-related |
|---|
| Protein accession | YP_002943375 |
|---|
| Protein GI | 239814465 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3795] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTCA TGGTTCTGGT CAAGGCCAAC AAGGATTCCG AAGCCGGCGT GATGCCGAGC
ACCGAAGTGC TCACCGCCAT GGGCAAGTTC AACGAGGAGC TGGTCAAGGC CGGCGTGCTG
CTCGCGGGCG AAGGGCTGCA TCCGTCATCC AGGGGCGCGC GCGTGCGCTG CGAAGGCCTC
AAGCGCACCG TGATCGACGG TCCTTTCGCC GAGACGAAGG AGTTGCTCGC GGGCTTCTGG
CTGCTGCAGG TCAAGTCGAA GGAGGAAGCC ATCGAGTGGA TCAAGCGCAG CCCGTTCCAG
GAGGGCGAGA TCGAGATCCG CCAGGTGTTC GAAGCCTCCG ATTTCGCCGA CTCGATGACA
CCCGAGCTGC TGGCGCAGGA AGAGCGCCTG CGCGCCGAAT CCGAGGCCCG GGCCAAGGCC
GGCCGCTGA
|
|---|
| Protein sequence | MRFMVLVKAN KDSEAGVMPS TEVLTAMGKF NEELVKAGVL LAGEGLHPSS RGARVRCEGL
KRTVIDGPFA ETKELLAGFW LLQVKSKEEA IEWIKRSPFQ EGEIEIRQVF EASDFADSMT
PELLAQEERL RAESEARAKA GR
|
|---|
| |