Gene Vapar_1419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1419 
Symbol 
ID7971247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1542249 
End bp1543391 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content68% 
IMG OID644792017 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_002943336 
Protein GI239814426 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAACG CATCTCAACC TCTGGTCGGC CTCGTGGGCT GGCGCGGCAT GGTCGGCTCG 
GTCCTGATGG ACCGCATGCA GGCCGAAGGC GACTTCGGGC TCATCGAGCC GGTCTTCTTC 
TCGACCTCCA ACGCCGGCGG CAAGGCCCCG GCCATGGCCA GGAACGAGAC CGCGCTCAAG 
GATGCCAACG ACATCGAGGC GCTCAAGAAG TGCGACATCG TCATCACCTG CCAGGGCGGC 
GACTACACCA GCGAGGTGTT CCCCAAGCTG CGCGCCGCGG GCTGGAGCGG CCACTGGATC 
GATGCCGCTT CCACCCTGCG CATGCAGGAT GACGCGGTCA TCGTGCTCGA CCCAGTCAAC 
CTGCCGGTGA TCCAGAACGC GCTCGCCAAG GGCGGCAAGA ACTGGATCGG CGGCAACTGC 
ACCGTCAGCT GCATGCTGAT GGGCGTGGGC GCCCTCTACA AGGCGGGCCT GGTCGAATGG 
ATGACCAGCA TGACCTACCA GGCGGCTTCG GGCGGCGGCG CGCAGCACAT GCGCGAGCTG 
CTGACGCAGT TCGGCACGCT CAACGCCGAG GTGCGCGCCC TGCTGGACGA CCCCAAGTCG 
GCCATCCTCG AGATCGACCG CAAGGTGCTG CACAGGCAGC AGAACCTGAG CGCCGCTGAA 
ACCGCCAACT TCGGCGCACC GCTGGGCGGC TCGCTGATCC CCTGGATCGA CAAGGACCTG 
GGCGACGGCA TGTCCAAGGA AGAATGGAAG GCCGGCGCGG AAACCAACAA GATCCTCGGC 
CAGGGCGCGG GCTTCGGCAC CGCCGCCGTG CCGGTGGACG GCTTCTGCGT GCGCATCGGC 
GCCATGCGCT GCCACAGCCA GGCCCTGACC TTCAAGCTCA AGAAGGACGT TCCCGTGGCC 
GACATCGAAG CGCTGATCGC CGCCGACAAC CCCTGGGCCA GCGTGGTGCC GAACACCCGC 
GAAGCCACCC TGAAGGACCT GACGCCGGTG GCCGTGACGG GCACCATGAA CATCCCGGTC 
GGCCGCATCC GCAAGCTGGC GATGGGCCCC GAGTACGTCG GCGCCTTCAC CATCGGCGAC 
CAGCTGCTGT GGGGCGCGGC CGAACCGCTG CGCCGCATGC TGCGCATCCT GCTCGAGGCT 
TGA
 
Protein sequence
MANASQPLVG LVGWRGMVGS VLMDRMQAEG DFGLIEPVFF STSNAGGKAP AMARNETALK 
DANDIEALKK CDIVITCQGG DYTSEVFPKL RAAGWSGHWI DAASTLRMQD DAVIVLDPVN 
LPVIQNALAK GGKNWIGGNC TVSCMLMGVG ALYKAGLVEW MTSMTYQAAS GGGAQHMREL 
LTQFGTLNAE VRALLDDPKS AILEIDRKVL HRQQNLSAAE TANFGAPLGG SLIPWIDKDL 
GDGMSKEEWK AGAETNKILG QGAGFGTAAV PVDGFCVRIG AMRCHSQALT FKLKKDVPVA 
DIEALIAADN PWASVVPNTR EATLKDLTPV AVTGTMNIPV GRIRKLAMGP EYVGAFTIGD 
QLLWGAAEPL RRMLRILLEA