| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1417 |
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| Symbol | truA |
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| ID | 7971245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1538434 |
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| End bp | 1539246 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792015 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_002943334 |
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| Protein GI | 239814424 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGCTGG CGCTAGGCAT CCGCTACAAC GGCCAGGCGT ACGAGGGCTG GCAGAGCCAG
CGTTCGGGCC GCACGGTGCA GGACAAGCTC GAAGCGGCGC TCGCCAAGTT CGCGGCGCAG
CCCATCGGCA CGCTGTGCGC CGGCCGCACC GATGCCGGCG TGCATGCGCT GATGCAGGTG
GTGCACTTCG ACACCACCGT CGAACGCGAG CCCTTCTCCT GGATGCGCGG CACCAACCGC
TTCCTGCCCG ACGACATCGC GGTGCAGTGG GCGCAGCCGG TGCCGGACGA ATTCCATTGC
CGCGCCAGTG CGCTGGCGCG GCGCTACCTC TACGTGCTGT CGCAGTCGCC CGTGCGGCCC
AGCCTCGATT CGGGCCGGGT CGGCTGGTCG ATGCATCCGC TCGACGGCGA TGCGATGCGC
GCCGCCGCCG CCCTCTTGGT GGGCAAGCAC GACTTCAGCT CCTTCCGCGC CTCGGCCTGC
CAGGCCCGCT CGCCGGTCAA GGACCTGCGG CGCATCGAGA TCACGCGAGT CGGCAGCGGC
GACCGCTGCC GCTGGCACTT CGAGTTCGAG GCCGATGCCT TCCTGCACCA CATGATCCGC
AACCTGATGG GCTGCCTCGT GCGCATCGGC CGCGGCGACG AACGGCCCGA ATGGATCACC
GAAGTGCTCG AGGCGCGCAG CCGCAAGGTG GCGGCGCCCA CCTTCTCGGC CAACGGGCTG
TATTTTCTCG GGCCGTTGTA CGACGCCAAG TGGGGTCTGC CGGCCGAGGC CACGCTGCAG
GCCGGCGGCG CTCCTTATGA TGGGCCGCCA TGA
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| Protein sequence | MRLALGIRYN GQAYEGWQSQ RSGRTVQDKL EAALAKFAAQ PIGTLCAGRT DAGVHALMQV
VHFDTTVERE PFSWMRGTNR FLPDDIAVQW AQPVPDEFHC RASALARRYL YVLSQSPVRP
SLDSGRVGWS MHPLDGDAMR AAAALLVGKH DFSSFRASAC QARSPVKDLR RIEITRVGSG
DRCRWHFEFE ADAFLHHMIR NLMGCLVRIG RGDERPEWIT EVLEARSRKV AAPTFSANGL
YFLGPLYDAK WGLPAEATLQ AGGAPYDGPP
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