Gene Vapar_1411 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1411 
Symbol 
ID7971239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1533280 
End bp1533951 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content66% 
IMG OID644792009 
Productpeptidase S16 lon domain protein 
Protein accessionYP_002943328 
Protein GI239814418 
COG category[R] General function prediction only 
COG ID[COG2802] Uncharacterized protein, similar to the N-terminal domain of Lon protease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAGCCA TGCAAGGTTC ATCGATGACC ACACAGCCCC TTTTGCATTC ACTGCCATTG 
TTCCCGCTCG GCACGGTCCT GTTTCCGGAC GGCGTGCTCC CGCTGCGTAT TTTCGAAGTA 
CGTTATCTCG ACATGATCGG CAAATGCCGC AAGGCCGACG CGCCCTTCGG CGTGGTCAGC 
CTCACGAGCG GCAGCGAGGT GCGCAAGGCC GGCGCCGAGG CGGAGAGCTT CGCGGCCGTC 
GGCACGCTGG CGGTCATCCG CGAATTCGAT TCGCCGCAAA GCGGCCTGCT GCAGATCGAA 
TGCGTCGGCA CGCAGCGCTT CCGGGTCCGC GCCGCCGAAC TGCAGAAATA CGGCTTGTGG 
GTTGCCGAAG TCGAAGCCGT GGCCGAAGAC ACGGCGCTCG AAATTCCAGG CGACCTCCAG 
CACACCGCCA CGGCGCTGCG GCGCCTCGTC AATACCCTCG AAGAACGCCG CCGCGCGCAG 
GGCGCCGAGG CCCTGCGCCT GCCCGTCGGC GAGCCCTACC GCTTCGACGA TTGCGGCTGG 
GTGGCCAACC GCTGGTGCGA ACTGGTGCCC ATGCAGCTCG AACTGCGGCA GCGGCTCATG 
GAGCTCGACA GTCCGCTGAT GCGGCTCGAG CTGGTCAGCG ATCTGCTGGC ACGTGCGGGC 
ATCACTGAAT AG
 
Protein sequence
MIAMQGSSMT TQPLLHSLPL FPLGTVLFPD GVLPLRIFEV RYLDMIGKCR KADAPFGVVS 
LTSGSEVRKA GAEAESFAAV GTLAVIREFD SPQSGLLQIE CVGTQRFRVR AAELQKYGLW 
VAEVEAVAED TALEIPGDLQ HTATALRRLV NTLEERRRAQ GAEALRLPVG EPYRFDDCGW 
VANRWCELVP MQLELRQRLM ELDSPLMRLE LVSDLLARAG ITE