Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1408 |
Symbol | |
ID | 7971236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1529794 |
End bp | 1530327 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644792006 |
Product | protein of unknown function DUF45 |
Protein accession | YP_002943325 |
Protein GI | 239814415 |
COG category | [R] General function prediction only |
COG ID | [COG1451] Predicted metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATATC TCGCGGGCTA CCCATCCGCG CTGCTGGCGC AGGTCCAGCA GCTGGTCGCC ACCGAAGGGC TCGCGCCTCT GCTGCGCAAG CGCTATCCGG GACCGCTTCA CGAGGTGCAG ACGGACCGTG CGCTCTACGA CTACGTGAGC GAACTCAAGA GCGATTTCAT GCGCAAAGCC CCGCCGCTGT CCAAGGTGGC GTTCGACAGC AAGCTGCATG TGATCCGCAA TGCGCTCGGC ACCCACACCA CCGTTTCGCG CGTGCAGGGC AGCAAGCTCA AGACCAAGCG CGAGATCCGG GTGGCGAGCC TGTTCAGGGA AGTGCCGCTG GAATGGCTGC GCATGATCGT GGTCCACGAG CTCGCGCACA TGAGAGAGCG CGACCATGAC AAGAGCTTCT ATGCGCTCTG CGAGCACATG GAGCCGGACT ACCACCGGCT CGAATTCGAT GTCCGGCTGT ACCTGACGCA CCTGGATTCG GGCGGCGAGC GGCTGTGGGC AAGTTCGCTG CCGGCGCCGG GCGCCGCGCC GTAG
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Protein sequence | MKYLAGYPSA LLAQVQQLVA TEGLAPLLRK RYPGPLHEVQ TDRALYDYVS ELKSDFMRKA PPLSKVAFDS KLHVIRNALG THTTVSRVQG SKLKTKREIR VASLFREVPL EWLRMIVVHE LAHMRERDHD KSFYALCEHM EPDYHRLEFD VRLYLTHLDS GGERLWASSL PAPGAAP
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