| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1407 |
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| Symbol | |
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| ID | 7971235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1528680 |
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| End bp | 1529786 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792005 |
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| Product | glycoside hydrolase family 3 domain protein |
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| Protein accession | YP_002943324 |
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| Protein GI | 239814414 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCG GGCCCGCCCG CACCCACGCG CCGCTGATCA TCGACGTGGC GGCGACCGAA
CTGAACGACG CCGACCGTCG GCGCATCGCC AATCCGCTGG TCGGCGGCGT GATCCACTTC
GCCCGCAACT GGCAGGACCG TGCGCAGATG AGCGCGCTCA ATGCCGAGAT CAAGGCGATC
CGCCCCGACC TGCTGATCTG CGTGGACCAC GAAGGCGGCC GGGTGCAGCG CTTTCGCACC
GACGGCTTCA CGCGCCTGCC CTCGATGCGC GCGCTCGGCG AGCTGTGGAT GCGCGATGCG
ATGCGCGCCA CGCAGGCCGC AACGGCCGCC GGCCAGGTGC TTGCCGCCGA ACTGCGCGCC
TGCGGCGTCG ACTTCAGCTT TGCGCCGGTG CTCGACCTCG ATTACGGCGG CAGCAGCGTG
ATCGGCGACC GCAGCTTCCA CCGCGACCCG CGCGTGGCGG CGCTGCTGGC CAAGAGCCTG
ATGCACGGCA TGCTGCAGAT GGGCATGCGC AACTGCGGCA AGCACTTTCC GGGGCACGGC
TTCGTCACCG CCGATTCGCA TGTGGAAATC CCGGTCGACC GGCGCAGCCT CAAGGCCATT
CTGGCCGACG ATGCGCGGCC CTACGACTGG CTCGCGGGCA CGCTCACCGC AGTGATGCCG
GCGCACGTGA TCTATCCGAA GGTCGACAAG CGGCCCGCGG GCTTTTCTTC CAGGTGGCTG
GAGGACATCC TGCGCAGCAG GCTCGGTTTC GATGGCGCCA TCTTCAGCGA TGACCTGAGC
ATGGAAGCAG GGCGCTACAT CGACGGCGAG CTGCTGAGCT ATGCCGATGC CGCGCTGGCG
GCACTCGACG CGGGCTGCGA CCTGGCGATG CTGTGCAACC AGAGCATCGG CGATGGCCGC
CCGCTCGACG AACTGCTCGA CGGCTTTGCC GCCGCGGCCA GTGCGGGGCG CTGGCAGCCC
GATGCGAACA GCGAGGCGCG CCGCCGGGCG CTGCTGCCGG AAACGCCGCC GCTCGGCTGG
AACGCGCTCG CCGATTCGGC GGGCTATCGG CAGGCGAGGC AAGTACTTGC GCAGGCCGGG
CTTGCGGCGC CTCGACAGGG CGCCTGA
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| Protein sequence | MTAGPARTHA PLIIDVAATE LNDADRRRIA NPLVGGVIHF ARNWQDRAQM SALNAEIKAI
RPDLLICVDH EGGRVQRFRT DGFTRLPSMR ALGELWMRDA MRATQAATAA GQVLAAELRA
CGVDFSFAPV LDLDYGGSSV IGDRSFHRDP RVAALLAKSL MHGMLQMGMR NCGKHFPGHG
FVTADSHVEI PVDRRSLKAI LADDARPYDW LAGTLTAVMP AHVIYPKVDK RPAGFSSRWL
EDILRSRLGF DGAIFSDDLS MEAGRYIDGE LLSYADAALA ALDAGCDLAM LCNQSIGDGR
PLDELLDGFA AAASAGRWQP DANSEARRRA LLPETPPLGW NALADSAGYR QARQVLAQAG
LAAPRQGA
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