Gene Vapar_1398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1398 
Symbol 
ID7971226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1519865 
End bp1521355 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content69% 
IMG OID644791996 
Productprotease Do 
Protein accessionYP_002943315 
Protein GI239814405 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGTTCA AAGTCGAGGG ACACAAGCTT CGTTCCTATC TCTTCGCATT CGGCATGGCC 
TGCTCGGCTG CCGTGGCGTT CGTGCCGGCC GCGCCGGCCA TGGCGCAGAC ACCGCAGGCG
CGCGGACTGC CCGATTTCGC CGATCTGGTG GAGCAGGTGG GGCCGGCCGT GGTCGGTATC
CGCACGGTCG AGAAAGTGAC CTCGGGCGGC GGCAGCGGCG AAATGGACGA GGAGATGCAG
GAGTTCTTCC GCCGCTTCTT CGGGCAGCCG CTGCCGGGCA ACCCGCGTCC GGGCCCGCGC
CCGAACCGGC CGCAGCAGCC GCAGGAGGAA GAGCGTCCGC GCGGCGTGGG CTCGGGCTTC
ATCCTGTCGG CCGACGGCTA CGTCATGACC AATGCCCACG TGATCGAGGA TGCCTCCGAG
ATCCTCGTCA CGCTGACCGA CAAGCGCGAA TTCAAGGCCA AGCTGATCGG TGCCGACAAG
CGCAGCGACG TTGCCGTGGT CAAGATCGAG GCGACCAGCC TTCCGGTGGT GAAGATCGGC
GACATCTCGA AGCTGCGCGT CGGCGAATGG GTCATGGCCA TCGGTTCGCC CTTCGGCCTG
GAGAACACCG TGACCGCCGG CATCGTGAGC GCGAAGCAGC GCGACACCGG CGACCTGGTG
CCCCTGATCC AGACCGACGT GGCCATCAAC CCCGGCAACT CGGGCGGCCC GCTGATCAAC
CTGCGCGGCG AAGTGGTGGG CATCAACAGC CAGATCTATT CGCGCTCGGG CGGCTACATG
GGCATCTCGT TCTCGATCCC GATCGACGAG GCGATCCGCG TCAGCGACCA GCTGCGCGCC
ACCGGCCGCG TTTCGCGCGG GCTGATCGGC GTGACCATCG GCTCGGTCTC CAAGGATGTG
GCCGAATCCA TCGGCCTGGG CAAGGCGCGC GGTGCGCTCG TGAGCAGCGT GGTGCCGGGT
TCGGCGGCCG ACAAGGCCGG CGTGCGCGAG GGCGACATCA TCACCAAGTA CGGCGACAAG
CTCATCGAGA CCCCCAGCGA CCTGTCGCGC TCGGTGGCCA GCACCAAGCC CGGCGCCAGG
AACACGCTGA CGGTGTTCCG CAACGGCAGC ACGCGCGAGC TCTCGGTCAC CGTGGCCGAG
GGCGATCCGG AAGCCAAGCC GTCCAGCAAG CGCCAGCCCG AGCGCGAGGA GCCGCAGGCC
AAGCCGTCGG CGGCCGGCAA GGCGCTCGGC CTCGTGGTGA GCGATCTGAC CGACGCGCAG
AAGAAGGAGC TCAAGATGCG CGGCGGCGTG CGCATCGAGG CGGCAAGCGA TGGTGCTGCG
CGGGCCGGGC TGCGCGAAGG GGACGTGATC CTGGCCGTGG GCAACATCGA GGTCTCGAGC
GTCAAGGAGT TCGAGACCGC GGTCGCCAAG GCCGACAAGG GCAAGCCCCT GAGCGTGCTG
TTCCGCCGCG GCGAGTGGGC CCAGTACGCC CTGATCCGCC CCGCACGCTG A
 
Protein sequence
MMFKVEGHKL RSYLFAFGMA CSAAVAFVPA APAMAQTPQA RGLPDFADLV EQVGPAVVGI 
RTVEKVTSGG GSGEMDEEMQ EFFRRFFGQP LPGNPRPGPR PNRPQQPQEE ERPRGVGSGF
ILSADGYVMT NAHVIEDASE ILVTLTDKRE FKAKLIGADK RSDVAVVKIE ATSLPVVKIG
DISKLRVGEW VMAIGSPFGL ENTVTAGIVS AKQRDTGDLV PLIQTDVAIN PGNSGGPLIN
LRGEVVGINS QIYSRSGGYM GISFSIPIDE AIRVSDQLRA TGRVSRGLIG VTIGSVSKDV
AESIGLGKAR GALVSSVVPG SAADKAGVRE GDIITKYGDK LIETPSDLSR SVASTKPGAR
NTLTVFRNGS TRELSVTVAE GDPEAKPSSK RQPEREEPQA KPSAAGKALG LVVSDLTDAQ
KKELKMRGGV RIEAASDGAA RAGLREGDVI LAVGNIEVSS VKEFETAVAK ADKGKPLSVL
FRRGEWAQYA LIRPAR