| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1398 |
|---|
| Symbol | |
|---|
| ID | 7971226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1519865 |
|---|
| End bp | 1521355 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791996 |
|---|
| Product | protease Do |
|---|
| Protein accession | YP_002943315 |
|---|
| Protein GI | 239814405 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTCA AAGTCGAGGG ACACAAGCTT CGTTCCTATC TCTTCGCATT CGGCATGGCC
TGCTCGGCTG CCGTGGCGTT CGTGCCGGCC GCGCCGGCCA TGGCGCAGAC ACCGCAGGCG
CGCGGACTGC CCGATTTCGC CGATCTGGTG GAGCAGGTGG GGCCGGCCGT GGTCGGTATC
CGCACGGTCG AGAAAGTGAC CTCGGGCGGC GGCAGCGGCG AAATGGACGA GGAGATGCAG
GAGTTCTTCC GCCGCTTCTT CGGGCAGCCG CTGCCGGGCA ACCCGCGTCC GGGCCCGCGC
CCGAACCGGC CGCAGCAGCC GCAGGAGGAA GAGCGTCCGC GCGGCGTGGG CTCGGGCTTC
ATCCTGTCGG CCGACGGCTA CGTCATGACC AATGCCCACG TGATCGAGGA TGCCTCCGAG
ATCCTCGTCA CGCTGACCGA CAAGCGCGAA TTCAAGGCCA AGCTGATCGG TGCCGACAAG
CGCAGCGACG TTGCCGTGGT CAAGATCGAG GCGACCAGCC TTCCGGTGGT GAAGATCGGC
GACATCTCGA AGCTGCGCGT CGGCGAATGG GTCATGGCCA TCGGTTCGCC CTTCGGCCTG
GAGAACACCG TGACCGCCGG CATCGTGAGC GCGAAGCAGC GCGACACCGG CGACCTGGTG
CCCCTGATCC AGACCGACGT GGCCATCAAC CCCGGCAACT CGGGCGGCCC GCTGATCAAC
CTGCGCGGCG AAGTGGTGGG CATCAACAGC CAGATCTATT CGCGCTCGGG CGGCTACATG
GGCATCTCGT TCTCGATCCC GATCGACGAG GCGATCCGCG TCAGCGACCA GCTGCGCGCC
ACCGGCCGCG TTTCGCGCGG GCTGATCGGC GTGACCATCG GCTCGGTCTC CAAGGATGTG
GCCGAATCCA TCGGCCTGGG CAAGGCGCGC GGTGCGCTCG TGAGCAGCGT GGTGCCGGGT
TCGGCGGCCG ACAAGGCCGG CGTGCGCGAG GGCGACATCA TCACCAAGTA CGGCGACAAG
CTCATCGAGA CCCCCAGCGA CCTGTCGCGC TCGGTGGCCA GCACCAAGCC CGGCGCCAGG
AACACGCTGA CGGTGTTCCG CAACGGCAGC ACGCGCGAGC TCTCGGTCAC CGTGGCCGAG
GGCGATCCGG AAGCCAAGCC GTCCAGCAAG CGCCAGCCCG AGCGCGAGGA GCCGCAGGCC
AAGCCGTCGG CGGCCGGCAA GGCGCTCGGC CTCGTGGTGA GCGATCTGAC CGACGCGCAG
AAGAAGGAGC TCAAGATGCG CGGCGGCGTG CGCATCGAGG CGGCAAGCGA TGGTGCTGCG
CGGGCCGGGC TGCGCGAAGG GGACGTGATC CTGGCCGTGG GCAACATCGA GGTCTCGAGC
GTCAAGGAGT TCGAGACCGC GGTCGCCAAG GCCGACAAGG GCAAGCCCCT GAGCGTGCTG
TTCCGCCGCG GCGAGTGGGC CCAGTACGCC CTGATCCGCC CCGCACGCTG A
|
|---|
| Protein sequence | MMFKVEGHKL RSYLFAFGMA CSAAVAFVPA APAMAQTPQA RGLPDFADLV EQVGPAVVGI
RTVEKVTSGG GSGEMDEEMQ EFFRRFFGQP LPGNPRPGPR PNRPQQPQEE ERPRGVGSGF
ILSADGYVMT NAHVIEDASE ILVTLTDKRE FKAKLIGADK RSDVAVVKIE ATSLPVVKIG
DISKLRVGEW VMAIGSPFGL ENTVTAGIVS AKQRDTGDLV PLIQTDVAIN PGNSGGPLIN
LRGEVVGINS QIYSRSGGYM GISFSIPIDE AIRVSDQLRA TGRVSRGLIG VTIGSVSKDV
AESIGLGKAR GALVSSVVPG SAADKAGVRE GDIITKYGDK LIETPSDLSR SVASTKPGAR
NTLTVFRNGS TRELSVTVAE GDPEAKPSSK RQPEREEPQA KPSAAGKALG LVVSDLTDAQ
KKELKMRGGV RIEAASDGAA RAGLREGDVI LAVGNIEVSS VKEFETAVAK ADKGKPLSVL
FRRGEWAQYA LIRPAR
|
|---|
| |