| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1384 |
|---|
| Symbol | |
|---|
| ID | 7971212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1508905 |
|---|
| End bp | 1509669 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791982 |
|---|
| Product | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase |
|---|
| Protein accession | YP_002943301 |
|---|
| Protein GI | 239814391 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0313] Predicted methyltransferases |
|---|
| TIGRFAM ID | [TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGCACG GCAAGCTCTA CCTCGTTCCG GCGCCGCTCG ACTTCGGCTG CGACATCCAG
GCGCCGCTGC AGGACGCCCT GCCCCTGGGC ACGATCCAGG CCGCCGCCGG GATCACCCAC
TGGATCTGCG AGAACGCCAA GTCGGCCCGC GCCTACCTGA AGCGGATCGA TGCCGTCGCG
CCGCTGGCGG CGCCGCTGCA GGCGCAGGAC ATCCGCGAAC TGCCGCGCGA GGTGCACAAG
AAGGGCGACC ACGCCGGCCA GTTCGACGCC CGGCCGCTGC TGGCCGCCGC GCTCGAAGGC
AACGACATCG GCCTGCTGAG CGAGGCCGGC ATGCCGGCGG TGGCCGATCC CGGTTCCTCG
GTGGCGCGCG CCGCGCACGA CCTGGGCATT GCCGTGGTGC CGCTCACCGG CCCCGTCTCG
CTGCTGCTGG CACTGGCCGC AAGCGGCCTC AACGGGCAGA ACTTCGCCTT CGTCGGCTAC
CTGCCGCAGG ACGCCGGCGA GCGCCAGGTG CGCATCCGCG AGCTCGAGGC GCTGGCGCTC
AAGACAGGCC AGACGCAGCT GTTCATCGAG ACGCCCTATC GCAACGCGGC GCTGCTGCAG
GCGCTGGTGC AGACGCTGCA GCACAACACC CGGCTCGCGG TGGCGCGCGG CCTCACGCTC
GCCAGCGCCC ACGTGCGCAG CGAAACCGTG AAATCCTGGC GCGCCAAGGC GCAGCCGGGC
ACATTGGACG AACGCCTGCC TGCCGTGTTC GCGATCGGGC GTTGA
|
|---|
| Protein sequence | MTHGKLYLVP APLDFGCDIQ APLQDALPLG TIQAAAGITH WICENAKSAR AYLKRIDAVA
PLAAPLQAQD IRELPREVHK KGDHAGQFDA RPLLAAALEG NDIGLLSEAG MPAVADPGSS
VARAAHDLGI AVVPLTGPVS LLLALAASGL NGQNFAFVGY LPQDAGERQV RIRELEALAL
KTGQTQLFIE TPYRNAALLQ ALVQTLQHNT RLAVARGLTL ASAHVRSETV KSWRAKAQPG
TLDERLPAVF AIGR
|
|---|
| |