| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1382 |
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| Symbol | |
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| ID | 7972677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1506683 |
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| End bp | 1507726 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791980 |
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| Product | peptidase S49 |
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| Protein accession | YP_002943299 |
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| Protein GI | 239814389 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACC CGAACCGCAC GGAACCCGAA GGTTTTGATC CTTTTGAGCC GGCCACCCCC
ATTGCGTCCT CGCAGGGCGC GCCGAGAAAC ATGGCCAAAG ACCCCACGCA GCGTCCCGGA
TGGGAGCGCG CAACGCTCGA GAAACTCGCC TTCGCCTCGC TCAACGAACA AAAGGCGGCG
CGCCGCTGGA AGACCTTCAC GCGCCTGTCG TGGCTCGCCT TCTTCATCTT CCTGGTCTGG
CTGGCGATGT CGCGCAGCAC GCCGAGCACC GCCAAGACCA CGGCCCACAC GGCAGTGGTC
GAGATCAAGG GCGAGATCGC CAACGGCGGC GACGCCAGCG CGGAATTCGT GGTCGCGGCC
ATGAAGACCG CGTTCGAGGA CGAGGGCGCC AAGGGCATCG TGCTGCTGAT CAATTCGCCG
GGCGGAAGCC CCGTGCAGGC GGGCATCATC AGCGACGAGA TCAAGCGCCT GAAGGCCAAG
CACAAGAAGC CGATCTACGC GGTGGTCGAG GAAACCTGCG CCTCGGCCGC CTACTACATT
GCCGCTGCCA CCGACAAGAT CTTCGTCGAC AAGGCCAGCA TCGTCGGCAG CATCGGCGTG
CTGATGGACG GCTTCGGCTT CACCGGCGTG ATGGAAAAGG TCGGCGTCGA GCGCCGGCTG
CTGACGGCCG GCGAGAACAA GGGCTTCCTC GACCCGTTCA GCCCCATGAG CGATGCGCAG
CGCGCCCATG CGCAGGCCAT GCTGAACCAG ATCCACACGC AGTTCATCAA CGTGGTGAAG
AACGGTCGCG GCGACCGGCT CAAGCTCGAC ACCCCGGGGC TTTTCAGCGG CCTCTTCTGG
AGCGGCGAGC AGGCCGTCGA GTTCGGCCTG GCCGACCAGC TGGGCAATGT CGATTTCGTG
GCACGTGAAG TCATCAAGGC CGAAGAGGTC ACCGACTACA CCCGGCGCGA CAACGTGGCC
GAGAAGCTCG CGAAGAAATT CGGCGCGGCC ATGGGCGCGG CCACCGTGCG CTCGCTGCAG
TCCGCCACGC CGGCGCTGCG CTGA
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| Protein sequence | MTDPNRTEPE GFDPFEPATP IASSQGAPRN MAKDPTQRPG WERATLEKLA FASLNEQKAA
RRWKTFTRLS WLAFFIFLVW LAMSRSTPST AKTTAHTAVV EIKGEIANGG DASAEFVVAA
MKTAFEDEGA KGIVLLINSP GGSPVQAGII SDEIKRLKAK HKKPIYAVVE ETCASAAYYI
AAATDKIFVD KASIVGSIGV LMDGFGFTGV MEKVGVERRL LTAGENKGFL DPFSPMSDAQ
RAHAQAMLNQ IHTQFINVVK NGRGDRLKLD TPGLFSGLFW SGEQAVEFGL ADQLGNVDFV
AREVIKAEEV TDYTRRDNVA EKLAKKFGAA MGAATVRSLQ SATPALR
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