| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1374 |
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| Symbol | hemC |
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| ID | 7973055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1496533 |
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| End bp | 1497459 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791972 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_002943291 |
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| Protein GI | 239814381 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.212718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACTTTT TGGGAGCGGC CTTGAGCAAT ATCGTGATCG CCACGCGCGA AAGCCGGCTC
GCCCTGTGGC AAGCCGAGCA CGTGCAGGCG CTGCTGCAGG AACGGGGCCA CGCGGTCAGC
CTGCTGGGCA TGACCACGCG CGGCGACCAG ATCCTGGACA AGTCGCTCAG CAAGGTGGGC
GGCAAGGGCC TCTTCGTGAA GGAACTCGAA CTCGCGCTCG AGGAAGGCCG CGCCGACATC
GCGGTGCATT CGCTGAAAGA CGTGCCGATG GACCTGCCCG AGGGCTTCGT GCTGGCCTGC
GTGCTGGAGC GCGAAGACCC GCGCGATGCG CTGGTGTCGC CGCGCCATGC CTCGCTCGAC
GAGCTGCCGC AGGGCGCTGT CGTCGGCACC TCCAGCCTGC GGCGCGTGGT GCTGCTGCGC
GCCTTGCGGC CCGACCTGCG CATCGAGCCG CTGCGCGGCA ACCTCGACAC CCGCCTGCGC
AAGCTCGACC AAGGCCACTA CGACGCTATC GTGCTCGCGG CGGCCGGGCT CAAGCGGTTG
GGGCTCGAGC ATCGCATCCG GGTCGCCTTC GATCCCGACA CGATGCTGCC GGCCGCGGGG
CAGGGCGCAC TCGGCATCGA AGTGCGGGCC GACCGCACGG ACCTGATCGC GCTGCTGGCC
GCCTTGTCGC ACTCGCGCGA TTGGCTGGCC ACCGCCGCCG AGCGCGCGGT GAGCCGGTCG
ATGGGCGGCA GCTGTTCCAT GCCGCTGGCG GCCCATGCGC GCTGGCAGGC CGACGGTGCG
CTGCGCGTCG ATGCGGCTTG GGGCGACCCC GAAGGCAACG CTGCGCTGGT GCGGGTCCAT
GCGCAAGCGC CGGCCGCCGA CTTCGCGCAG GCCGGCGCCC TCGGCGAGCG TGCCGCCGCG
CTGCTGCGCG ACGCCGGCGC GCACTGA
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| Protein sequence | MYFLGAALSN IVIATRESRL ALWQAEHVQA LLQERGHAVS LLGMTTRGDQ ILDKSLSKVG
GKGLFVKELE LALEEGRADI AVHSLKDVPM DLPEGFVLAC VLEREDPRDA LVSPRHASLD
ELPQGAVVGT SSLRRVVLLR ALRPDLRIEP LRGNLDTRLR KLDQGHYDAI VLAAAGLKRL
GLEHRIRVAF DPDTMLPAAG QGALGIEVRA DRTDLIALLA ALSHSRDWLA TAAERAVSRS
MGGSCSMPLA AHARWQADGA LRVDAAWGDP EGNAALVRVH AQAPAADFAQ AGALGERAAA
LLRDAGAH
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