| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1363 |
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| Symbol | |
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| ID | 7973044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1483464 |
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| End bp | 1484210 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791961 |
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| Product | two component transcriptional regulator, LytTR family |
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| Protein accession | YP_002943280 |
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| Protein GI | 239814370 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.124915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTCA AGACGCTGAT CGTTGACGAC GAAGCCCTGG CCCGCTCGCG CCTGCGCACG
CTGCTGCGCG ACTGCCGCTC GCCCGCCGCC GAAGTGGTGG CCGAGGCCGC CCAGGGCGCC
GAGGCGCAGC AGCATCTCGC GGGCATGGCG CTGGACCTGG TGCTGCTCGA CGTCCACATG
CCCGGCATCG ACGGCATCGA GGTGGCGCGC GCCCTGCGCG GGCGGGCCGA CGCGCCGGCC
GTGGTGTTCG TCACCGCCCA CGCGGCGCAC GCCGTGACCG CCTTCGACCT CGACGCGGTC
GACTACCTGA CCAAGCCGGT GCGCGCCGAG CGGCTCCAGC AGGCGCTGCA GAAGGCCGAG
CGTTTTTTGA AAGAGCGGCG CGCGCTGCAG GCCGACGCGC TGCAGGAAAG CGTGCTGATC
CAGGACCGCG GCCGCGCCGA GCGGGTCCCG CTGTCGGAGG TGCTCTACCT GAAGTCCGAG
TACAAGTACC TCACGGTGCG CACCGCCACG CGCAGCCACA TCCTGGATGG CTCGCTGAAC
GAATTCGAGG AGCGCTATCC CACCCGCTTC CTGCGCGTGC ACCGCAATGC GCTGGTGGCG
CGCTCGGCCA TCCGCGCGCT CGAGAAATAC GACGACGGGG AAGACGCCGA AGGCTGGGCC
CTGCGGCTCG ACGCGATTCC CGAACCCGTG GCGGTGTCGC GGCGACAATT GGCTGCAGTG
CGCGAAGTGC TGAAGGAAGC GCGATGA
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| Protein sequence | MTLKTLIVDD EALARSRLRT LLRDCRSPAA EVVAEAAQGA EAQQHLAGMA LDLVLLDVHM
PGIDGIEVAR ALRGRADAPA VVFVTAHAAH AVTAFDLDAV DYLTKPVRAE RLQQALQKAE
RFLKERRALQ ADALQESVLI QDRGRAERVP LSEVLYLKSE YKYLTVRTAT RSHILDGSLN
EFEERYPTRF LRVHRNALVA RSAIRALEKY DDGEDAEGWA LRLDAIPEPV AVSRRQLAAV
REVLKEAR
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