| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1360 |
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| Symbol | |
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| ID | 7973041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1479453 |
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| End bp | 1480931 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791958 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_002943277 |
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| Protein GI | 239814367 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.165337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTCTACG CCATCCCGCT CGAGAACAAA CCGAGCTGGC GCAATCCACC GTGGATGACG
GTGCTGCTGA TCCTCGTGAA CATGATCGTG TTCTGGGGAC CGCAGCGCAG CGAGGAAAAG
GCCCAGGAGC GCGCGGCCCG CTACTACGTG AACAGCGTGC TGCCCGAGCT GGAGCTGCCG
CCCTTCGTGG AGTGGCTCGA GAAGACGGAC CCCAGGCGCG GCAAGCAGGC GCGGCGCATG
CTGCCGCACG AGGAAACCCA TCCGCAGCTG CTCGACAGCC TGCAGAACGA CAGGAAATTC
CTGCAGAAGC TGCAGGCCGG CGAGGTCATC ACGCCCGCGA ACCCGCGCCA TGCCGAATGG
AAGCGCGACC GCCAGCAGTA CGAGGCGATG CGGCCGGCGT CCTTCACCCA GCGCTGGTCG
CTCGACCATG ACAAGGGCGC CGAGCCCAAG CCCTGGACCT GGATCACCGC GGCCTTCCTG
CACGCCGACA CCGGCCACCT GCTGGGCAAC ATGCTGTTCC TCTTCCTGTT CGGCTTCTCG
GTCGAACTGG CGCTGGGGCG CGGCACCTAC CTGGCCTTCT ACCTGCTCGG AGCCGCCGGC
TCTTCGCTGT TGTCTGGCTG GGCCTATGCC GGCAACGGCG GCCACGGCCT TGGCGCCTCG
GGTGCGATCT CGGCGCTGAT GGGCATGTAC GCCGTGATGT ACCGGCTGCG GCGCATCCGG
TTCTTCTACC AGCTCTTCTT CTATTTCAAC TACGTCACGG CGCCTGCCCT CCTGCTGCTG
CCGGCCTGGA TCGCCAACGA GCTGATGCAG CAATGGCGGG GTGACCAGAG CGTCGGCTAC
ATGGCGCACC TGGGCGGCCT CCTGACGGGC GCTGCGCTGA TGGCCGGTGC CATGTGGCTG
GGCCGCGTGA AGGCGCCCGA GACCGTGAAA TCGGAAATGG CGACCGACGA CGACCGCTTC
GAACAGCACG TGGCCGCCGC GCGCAAGCTG TCGGCGGCAA TGAAGTTCGA GCCCGCCTGC
GCCGAGTGGC GCGCCGCCGC CGCCTTGCGC CCCGGCGACA CCGACACGCT GCGCGCCTGG
TTCAACACCG CGCGGCTGCA GCCCGCGGGC GAAGATTTCC ACCAGGCCGC GCGCCGCATC
TTCCGCCTGC CCGCCACCGA CCCCGACACC CTGGCCCTGC AGCACGCCAG CTACACCACC
TACCTCGACC AGGCCAAGCC CGGCGCGCGC CTGAAGGCCG ACGACATGGC CCGCCTGGCG
CGCCGCTTCA CGCGCGTGCG CCAGTTCCAG GACGCCGACA AGCTGTGCCG CGTGCTGCTG
AAGACGGCGC CCGACCATCC GGAGCTGGCC GACACGCTGT CGGTCTGCGC CAACGGCCTG
CTGCATGCCG GCGAGCGCGA CATGGCCGTC GGCTGGCTGC CGCACCTGCT GCGGATCGCG
CCCAACGACA TGGTGACGCG CGCCCTCGAG CGCGCCTGA
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| Protein sequence | MFYAIPLENK PSWRNPPWMT VLLILVNMIV FWGPQRSEEK AQERAARYYV NSVLPELELP
PFVEWLEKTD PRRGKQARRM LPHEETHPQL LDSLQNDRKF LQKLQAGEVI TPANPRHAEW
KRDRQQYEAM RPASFTQRWS LDHDKGAEPK PWTWITAAFL HADTGHLLGN MLFLFLFGFS
VELALGRGTY LAFYLLGAAG SSLLSGWAYA GNGGHGLGAS GAISALMGMY AVMYRLRRIR
FFYQLFFYFN YVTAPALLLL PAWIANELMQ QWRGDQSVGY MAHLGGLLTG AALMAGAMWL
GRVKAPETVK SEMATDDDRF EQHVAAARKL SAAMKFEPAC AEWRAAAALR PGDTDTLRAW
FNTARLQPAG EDFHQAARRI FRLPATDPDT LALQHASYTT YLDQAKPGAR LKADDMARLA
RRFTRVRQFQ DADKLCRVLL KTAPDHPELA DTLSVCANGL LHAGERDMAV GWLPHLLRIA
PNDMVTRALE RA
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