| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1345 |
|---|
| Symbol | |
|---|
| ID | 7973026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1462355 |
|---|
| End bp | 1462981 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791943 |
|---|
| Product | Lysine exporter protein (LYSE/YGGA) |
|---|
| Protein accession | YP_002943262 |
|---|
| Protein GI | 239814352 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.123136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATCG AACTCTGGCT CGCCTTCGTC GCCGCATCGT CCGTGCTGCT GATCATTCCC
GGACCGACCA TCCTCACGGT GATCAGCTAT TCCATGTCGC ACGGCCGGCG CGCCAACGTG
CCGCTGGTGG CCGCGGTGGC GCTCGGCGAT TCCACCGCGC TGGTGGTGTC GCTGCTCGGC
CTGGGCGCGC TGCTGGCCGC GTCGGCGTTC TGGTTCACGG TGGTGAAGTG GGCGGGCGGG
CTGTATCTGC TGTACCTCGG CATCAAGCTG CTGCGCGCGG GCATCGGCGG CACTGAAATC
GCGGCGCCCG CGGCGCCCGA TTCGCGCTGG CGGCTGTTCG CCAACACCTA CCTGGTGACG
GCACTCAACC CCAAGGGCAT CGTGTTCTTC GTGGCGTTCC TGCCGCAGTT CCTGAGCCCC
GCGGCCGACA TGACGCGCCA GCTCTGGGTG CTGGCCGTCA CCTTCGTGGC GATGGCTGCG
CTCAATGCCA CGCTCTATGC CGTGTTCGCG GGATCGGCCC GCAAGCTGCT GTCTTCGCCG
CGCGCGCAGC GGCGCTTCAA CCTTGCGGGC GGCTCGCTGC TGAGTGCGGC GGGCGTGTGG
GCGCTGCTCG CGCGCCGGCC CGCCTGA
|
|---|
| Protein sequence | MPIELWLAFV AASSVLLIIP GPTILTVISY SMSHGRRANV PLVAAVALGD STALVVSLLG
LGALLAASAF WFTVVKWAGG LYLLYLGIKL LRAGIGGTEI AAPAAPDSRW RLFANTYLVT
ALNPKGIVFF VAFLPQFLSP AADMTRQLWV LAVTFVAMAA LNATLYAVFA GSARKLLSSP
RAQRRFNLAG GSLLSAAGVW ALLARRPA
|
|---|
| |