Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1342 |
Symbol | |
ID | 7973023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1458825 |
End bp | 1459514 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791940 |
Product | GntR domain protein |
Protein accession | YP_002943259 |
Protein GI | 239814349 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00721185 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCTCC AAGCCCCCCG AACCTCCCTG GCCGACAGTG CCGCCGACAG CATCCGCGCC GAGATCGCGG CCGGCCGCTG GACCGTCGGA TCGCGCATTC CGATCGAGCC GCAGCTTGCG CAACTGCTCG GCGTGAGCCG CGGCACCGTG CGCGAAGCGG TGAAGACGCT GGTCTCGCGC GGCCTGCTCG AAGTGCGGCA AGGCTCGGGC ACCTATGTGC GCTCGGGCTT CGACCCGTCG GCCAGCCTGC AGAAGATGCG GCGCGCAAGC CTGCGCGACC AGTTCGAGGT GCGCCGCGCG CTCGAGGTCG AGGCCGCGCG GCTGGCCGCC GTGCGCCACA CCGCCAAGGA CCTGCGCAAC CTGAACAGCC TGCTCAACAA GCGCGGCGTG CCCGACGCGA GCGACGGCGG CGCGGGCTTC ATCGAGCGCG ACCTGGCCTT CCACCTGGCC ATCGTCGACA TCTCGGGCAA CCTCGCGCTG GCAGAAACCT GCCGCTTCAT TGCCGGCTAC ATCAAGGAAA CCATCGCGAG CACGATGGGC ACCAGCCTGC CCGAACCCGA CACGGCTGCG CACACCGCCA TCCTCGAGGC CATTGCAAGC CGCGACCCCG ACCGCGCCGC CGAGGCGGTG CGCGCCTTCA TGTCGCCGAT GATCGACGCG CTGGCGCAAG ACGCCGAGCC TGTCCGATGA
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Protein sequence | MLLQAPRTSL ADSAADSIRA EIAAGRWTVG SRIPIEPQLA QLLGVSRGTV REAVKTLVSR GLLEVRQGSG TYVRSGFDPS ASLQKMRRAS LRDQFEVRRA LEVEAARLAA VRHTAKDLRN LNSLLNKRGV PDASDGGAGF IERDLAFHLA IVDISGNLAL AETCRFIAGY IKETIASTMG TSLPEPDTAA HTAILEAIAS RDPDRAAEAV RAFMSPMIDA LAQDAEPVR
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