Gene Vapar_1342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1342 
Symbol 
ID7973023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1458825 
End bp1459514 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content71% 
IMG OID644791940 
ProductGntR domain protein 
Protein accessionYP_002943259 
Protein GI239814349 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00721185 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTCC AAGCCCCCCG AACCTCCCTG GCCGACAGTG CCGCCGACAG CATCCGCGCC 
GAGATCGCGG CCGGCCGCTG GACCGTCGGA TCGCGCATTC CGATCGAGCC GCAGCTTGCG
CAACTGCTCG GCGTGAGCCG CGGCACCGTG CGCGAAGCGG TGAAGACGCT GGTCTCGCGC
GGCCTGCTCG AAGTGCGGCA AGGCTCGGGC ACCTATGTGC GCTCGGGCTT CGACCCGTCG
GCCAGCCTGC AGAAGATGCG GCGCGCAAGC CTGCGCGACC AGTTCGAGGT GCGCCGCGCG
CTCGAGGTCG AGGCCGCGCG GCTGGCCGCC GTGCGCCACA CCGCCAAGGA CCTGCGCAAC
CTGAACAGCC TGCTCAACAA GCGCGGCGTG CCCGACGCGA GCGACGGCGG CGCGGGCTTC
ATCGAGCGCG ACCTGGCCTT CCACCTGGCC ATCGTCGACA TCTCGGGCAA CCTCGCGCTG
GCAGAAACCT GCCGCTTCAT TGCCGGCTAC ATCAAGGAAA CCATCGCGAG CACGATGGGC
ACCAGCCTGC CCGAACCCGA CACGGCTGCG CACACCGCCA TCCTCGAGGC CATTGCAAGC
CGCGACCCCG ACCGCGCCGC CGAGGCGGTG CGCGCCTTCA TGTCGCCGAT GATCGACGCG
CTGGCGCAAG ACGCCGAGCC TGTCCGATGA
 
Protein sequence
MLLQAPRTSL ADSAADSIRA EIAAGRWTVG SRIPIEPQLA QLLGVSRGTV REAVKTLVSR 
GLLEVRQGSG TYVRSGFDPS ASLQKMRRAS LRDQFEVRRA LEVEAARLAA VRHTAKDLRN
LNSLLNKRGV PDASDGGAGF IERDLAFHLA IVDISGNLAL AETCRFIAGY IKETIASTMG
TSLPEPDTAA HTAILEAIAS RDPDRAAEAV RAFMSPMIDA LAQDAEPVR