| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1330 |
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| Symbol | |
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| ID | 7973011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1447139 |
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| End bp | 1448476 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791928 |
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| Product | metabolite/H+ symporter, major facilitator superfamily (MFS) |
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| Protein accession | YP_002943247 |
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| Protein GI | 239814337 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.481806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCAG CCACTTCCAA TCCGGGGAGC TCATCGGCCC TCGCATCGCC ACCTCCTCCC
CACTACACGG CAGAAGAAAA ACGCCACCGC GTCTTCTCGA TCATGGCGGC CTCGTCGGGC
AACCTGGTCG AGTGGTTCGA CTTCTACGTG TATGCCTTCT CGGCGCTGTA TTTCGCGTCG
TCGTTCTTTC CCAAGTCGGA CCCGACGGTG CAGCTGCTGA ACACCGCCGG CGTGTTCGCG
GCGGGCTTCC TGATGCGGCC GATCGGCGGC TGGCTGTTCG GGCGCATTGC GGACAGGGTC
GGGCGCAAGA CCTCGCTGCT GATCTCGGTG TCGATGATGT GCGGCGGCTC GCTGGTGATT
GCCTTCCTGC CCACCTATGC GCAGATCGGC GCCTGGGCGC CGTTCCTGCT GCTGGTCTGC
CGCCTGTTCC AGGGCCTGTC GGTGGGCGGC GAATACGGCA CCACCGCCAC CTACATGAGC
GAGGTCGCGC TGCGCGGGCA GCGCGGCTTC TACTCGTCGT TCCAGTACGT CACGCTGATT
GGCGGGCAGC TGCTGGCGGT GCTGGTGATC GTGGTGCTCG AGCAGCTGCT CACCGAAGCC
GAGCTCAAGG CCTGGGGCTG GCGCATTCCG TTCGTCATCG GCGCGGTGGC CGCGGTGGTG
GCGCTGCTGC TGCGGCGCAC GCTGCACGAG ACGCAAAGCG CCGAAGCCAA GGCCAACAAG
GAGGCCGGCA GCATGACCGG GCTCTTCAAG CACCACATGC CGGCCTTCCT GACGGTGCTG
GGCTTCACGG CCGGCGGCTC GCTGATCTTC TACACCTTCA CCACCTACAT GCAGAAGTAC
CTGGTGAACA CGGTGCACCT GCCGATCAAG ACCGCCAGCT ACGTGATGAC CGGCGCGCTC
TTCCTCTACA TGTGCATGCA GCCGCTGTTC GGCGCGCTGT CGGACCGCAT CGGGCGGCGC
AACAACATGC TGCTGTTCGG CGGGCTCGGC GCGCTGGCCA CGGTGCCGAT CCTCACGGCG
CTGCAGCACA CCACGAACGC GGTGGCCGCC TTCGCGCTGA TCATCGCGGC GCTGGCGATC
GTGAGCTTCT ACACCTCGAT CAGCGGCATC GTGAAGGCCG AGATGTTTCC GCCCGAGGTG
CGCGCGCTGG GCGTGGGCCT GGCCTACGCC GTGGCCAACG CGATCTTCGG CGGCTCGGCC
GAGTACGTGG CGCTGGGGCT CAAGTCGCTG GGCCACGAAT CGGCCTTCTT CTGGTACGTG
ACCGCGATGA TGGTGATCGC CTTCCTCGTG AGCCTGCGGC TGCCGCGGCA GGCGAGCTAC
CTGCACCACG ACCACTGA
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| Protein sequence | MSAATSNPGS SSALASPPPP HYTAEEKRHR VFSIMAASSG NLVEWFDFYV YAFSALYFAS
SFFPKSDPTV QLLNTAGVFA AGFLMRPIGG WLFGRIADRV GRKTSLLISV SMMCGGSLVI
AFLPTYAQIG AWAPFLLLVC RLFQGLSVGG EYGTTATYMS EVALRGQRGF YSSFQYVTLI
GGQLLAVLVI VVLEQLLTEA ELKAWGWRIP FVIGAVAAVV ALLLRRTLHE TQSAEAKANK
EAGSMTGLFK HHMPAFLTVL GFTAGGSLIF YTFTTYMQKY LVNTVHLPIK TASYVMTGAL
FLYMCMQPLF GALSDRIGRR NNMLLFGGLG ALATVPILTA LQHTTNAVAA FALIIAALAI
VSFYTSISGI VKAEMFPPEV RALGVGLAYA VANAIFGGSA EYVALGLKSL GHESAFFWYV
TAMMVIAFLV SLRLPRQASY LHHDH
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