Gene Vapar_1328 details

Gene Information

• Locus tag: Vapar_1328
• ID: 7973009
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1445177
• End bp: 1445740
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791926
• Product: protein of unknown function DUF1089
• Protein accession: YP_002943245
• Protein GI: 239814335
• COG category: [S] Function unknown
• COG ID: [COG3554] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0834165
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGACAG TTTCCTCCAT CCTGTGGCGC AGGCTCGATG CACCGGGCCA TGACGCCTGC 
CGGCTCGAGC GCAACGCGAC CGCGTGGCAG CTCGACGGCG CCGCCGTGTT CCGCCTCGAG 
GACGGCCGCA TCGGCCAGCT GCACTACCGC GTGCGCTGCG ACCTGCACTG GCACACGCAG 
TGGGGCACCG TGCGCGGCTG GCTCGGCGGC AGCGCCATCG ACCTGGCCAT TGCCCGCGAT 
GCGCGCGGCC ACTGGAAGCT CAACGACGAG GCGGTGCCCG ACCTGTCGCA TTGCACCGAC 
CTCGACCTGG GCTTCACGCC CGCCACCAAC CTGCTGCAGC TGCGCCGGCT CAACCTGGCA 
AAGGGCGAGG GCGCCGATGC GCCGGCCGCC TGGGTCGACC TGGACGGCGG CGGCGTGCTC 
AGCGAGCTGA TGCAGCGCTA CGAGCGAACC GCGGACGACG CCTATGCCTA CGAGGCCAAG 
CGCTTCGACT ACGCGGCCAC CCTGCGCGTC ACGCAGGACG GCTTCGTGCG CGACTACCCG 
GGCCTCTGGA GCGCCGAAGC CTGA 

 

Protein sequence

MQTVSSILWR RLDAPGHDAC RLERNATAWQ LDGAAVFRLE DGRIGQLHYR VRCDLHWHTQ 
WGTVRGWLGG SAIDLAIARD ARGHWKLNDE AVPDLSHCTD LDLGFTPATN LLQLRRLNLA 
KGEGADAPAA WVDLDGGGVL SELMQRYERT ADDAYAYEAK RFDYAATLRV TQDGFVRDYP 
GLWSAEA