| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1320 |
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| Symbol | |
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| ID | 7973001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1436994 |
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| End bp | 1438241 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791918 |
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| Product | putative DNA topoisomerase, type I |
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| Protein accession | YP_002943237 |
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| Protein GI | 239814327 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3569] Topoisomerase IB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.310759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGCCC GCTCCAGATC GACCGCCCCG CCCTCCAGGC CCTCGCCGAC GGCCGCGCCC
ATTGCCAACG GCCTGGTCTA CGTGAACCCC GACATGCCGG GCATCCGGCG ACTGAAGCAC
GGCGAGCACT TCCGCTACCG CGACGCGCAG GGCCGCTGGG TGCGCGACGC GGACGAGCTC
TCCCGCATCC GCATGCTGGC GATTCCGCCG GCCTACACGC AGGTGTGGAT CTGCCCGCTG
CCCAACGGCC ACCTCCAGGC CACCGGCATC GATGCCCGCG GCCGCAAGCA GTACCGCTAC
CACCCCGACT GGCGGCTTTT CAAGGACGAG ACCAAGTTCG AGCGCCTCGA GGCCTTCGGG
CTCGCGCTGC CGCGCATCCG CGCCCGCGTC ACGCGCGACC TGCAGGAAGG CGCGGCAACG
GCCAAGGCGC CCGGTCGCCA GCAGGTGCTG GCAGCCCTGG TGCGGCTGCT CGACACCACG
CTGCTGCGCG TGGGCAACGA GGAATACGCC AGCAGCAACG GCTCCTTCGG CCTCACCACG
CTGCGCAACC GGCACGCGGC CGTGCAGGGC GCGGCGCTGC GGCTGCGCTT CAGGGGCAAG
AGCGGCGTGA TGCATGAAGC CCGGCTCGAC GATCCGCGCG TGGCCAGGGT GGTGCGCCAA
TGCCAGCAGC TGCCCGGCCA GGCGCTGTTC CAGTACCAGG ACGAAGACGG GGAGCTGCGC
AGCGTCTCGT CCACCGACGT CAACGGCTAC ATCGCCGAAG CCTCGCCCGG CGAGCGCTTC
ACCGCAAAGG ACTTCCGCAC CTGGCACGGC ACGGTGCAGG CGCTGGAGCT CACGCGGCTG
GCCTGCGAAC CGGGCCGCAC GGCCGCCGAC GGCACGCGCT ACAGCGCCAA GGAAATACTG
GCCGCCGTGG CCAGGCAGCT GGGCAACACG CCCGCGGTCT GCAAGAAGGC CTACGTGCAC
CCGGCCGTGC TGGCGCTGGG CAGCGCGCTT GCGGGCGACG AGGAAGACCC CGCGGCCGAA
CTGCTGCGAA AGATGTCGGC CCGTACCGCG GCACGCAAGA CGCGCGGGCT CCACGCCGCC
GAACAGCGGC TGCTCGCCTT CCTGCGGATG CATCGGCAAG GCCAGGCGCG CCAGCAGCGC
GAGGCACGCA GCGCCAACGG CCGGCGCAAG GCCGGAGAAG AACGACGAAG GCCTCAGCCC
GGCGCGAGCG GAAAGCGCAC GCTGTCGCGC TCGAGCGCCA CGGTGTAG
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| Protein sequence | MPARSRSTAP PSRPSPTAAP IANGLVYVNP DMPGIRRLKH GEHFRYRDAQ GRWVRDADEL
SRIRMLAIPP AYTQVWICPL PNGHLQATGI DARGRKQYRY HPDWRLFKDE TKFERLEAFG
LALPRIRARV TRDLQEGAAT AKAPGRQQVL AALVRLLDTT LLRVGNEEYA SSNGSFGLTT
LRNRHAAVQG AALRLRFRGK SGVMHEARLD DPRVARVVRQ CQQLPGQALF QYQDEDGELR
SVSSTDVNGY IAEASPGERF TAKDFRTWHG TVQALELTRL ACEPGRTAAD GTRYSAKEIL
AAVARQLGNT PAVCKKAYVH PAVLALGSAL AGDEEDPAAE LLRKMSARTA ARKTRGLHAA
EQRLLAFLRM HRQGQARQQR EARSANGRRK AGEERRRPQP GASGKRTLSR SSATV
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