| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1316 |
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| Symbol | |
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| ID | 7972997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1433936 |
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| End bp | 1435450 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791914 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002943233 |
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| Protein GI | 239814323 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.376385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAA TGCCGGCACC CACGCGAATC CACGAGCTGC TCGAAGCGCG CGCATTGCAG
TCGCCGGGCG ACGCCTTTCT CTTCGAACCA TCGGGCACCG TCTCGTACGG CGCGCTGCAG
GCCATGGCCG AGGCGGCCGC GCAGGACCTC TTGGCCGCCG GCGTGCGGCC GACCGACCGC
GTGCTGCTGG TGGCCGAGAA CTGCGCCGCG CACATTGCGC TCATCATGGC GTGCAGCCGC
ATCGGCGCAT GGTCGTGCGG GGTCAATGCG CGCATGTCGC CCGGCGAGGT CGCGGCCATT
GCCGAGCGCG CCGATGCGCG GCTGTGCTGC TTCACCACCG ATGCCTCGGA CGCCGCGCGG
CAGCATGCCC AGCGCGCCGG CGCGGTGCCC TCGGCGCTGC CGGGCGTGAT GCGCTCGGCC
ATGCGCGCCG AGGCCAGGCC AGAGGCCGAT CCCGCGCTCG CGGATACCGC GGCCATCATC
TTCACTTCAG GCACCTCGGG TACGCCGAAG GGCGTGATGG TGTCGCACCG CGGGCTGCTG
CATTTCGGCC GCGTGTCGGC CGGCGTGCGG GCGCTGGGCG CGCACGACCG GGTCTACGCC
TTCCTGCCGA TGACGCACAT CTTCGGCATC GGCACGGTGC TCATGGCCGC GCTCACGGGC
GGCGCGGCGC TGGTGCTGCG CGCGAGCTTC TCGCCGGCCG ACATGCTGCA TGCGCTGGCG
CATGAAGAGG TGTCCAACCT GCTCGGGCCG CCCACGATGT ATGCGCGGCT GCTGGCCCAC
ATCGAGGCCA ATCACGGTGC GCCGCGCTTT CCGGCGCTTC GCTATGTCTA CACCGGCTCG
GCGCCGCTCG ATCCAGCGCT CAAGCAGCGC GTCGAGGCGC TGTTCGGCCA GCCGCTGCAC
TACGGCTATG GCCTCTCGGA GTACGCGGGC TCGGTGTTCC TCACGCGCGT GGAGGCACCG
CGTGCGGACA CGGCCGCGGG CCATGTGGTC GAGGGCGGCG AGGCGCGCAT CGTGGGGCCC
GATGGCCAGG ACCTGGCGCC GGGCGAGACC GGCGAGATCT GGCTGCGCGG GCCCGGCCTC
ATGCTGGGCT ACTTCCGCGA TGCGGCAGCC ACGGCGCAGG TCATGCGCCC CGGCGGCTGG
TATGCGAGCG GCGACCTCGG GCGCTTCGAT GCGGACGGTG CGCTGTTCGT GGTCGGCCGG
CTCAAGGAAA TGATCATCCG CTCGGGCTTC AACGTCTATC CGGCGGAGAT CGAGGCGGTG
ATCGGCCGCT TTGCGGGCGT GCACCTTTGC GCGGTGGTGG GCGTGCCCGA GGCCGACGGC
AACGAGCGCA TCGTCGCCTT CGTCGAGATG AAGCCCGGCG CCGTGCTCGA TGAACCGGCG
CTGCGCGCCT ACCTCGCGGA GCACCTGTCG CCCTACAAGC GGCCCGCGCG CATCGAGACC
GTCGACGCCA TGCCGACCAC GGCCAACGGC AAGCTGCTCA AGCGCGAGCT GCAGGCGCGC
GCCGCCCGGC CCTAG
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| Protein sequence | MSEMPAPTRI HELLEARALQ SPGDAFLFEP SGTVSYGALQ AMAEAAAQDL LAAGVRPTDR
VLLVAENCAA HIALIMACSR IGAWSCGVNA RMSPGEVAAI AERADARLCC FTTDASDAAR
QHAQRAGAVP SALPGVMRSA MRAEARPEAD PALADTAAII FTSGTSGTPK GVMVSHRGLL
HFGRVSAGVR ALGAHDRVYA FLPMTHIFGI GTVLMAALTG GAALVLRASF SPADMLHALA
HEEVSNLLGP PTMYARLLAH IEANHGAPRF PALRYVYTGS APLDPALKQR VEALFGQPLH
YGYGLSEYAG SVFLTRVEAP RADTAAGHVV EGGEARIVGP DGQDLAPGET GEIWLRGPGL
MLGYFRDAAA TAQVMRPGGW YASGDLGRFD ADGALFVVGR LKEMIIRSGF NVYPAEIEAV
IGRFAGVHLC AVVGVPEADG NERIVAFVEM KPGAVLDEPA LRAYLAEHLS PYKRPARIET
VDAMPTTANG KLLKRELQAR AARP
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