| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1307 |
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| Symbol | |
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| ID | 7972988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1423246 |
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| End bp | 1424133 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791905 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002943224 |
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| Protein GI | 239814314 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.262852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCG ACCTGAAGTC GCTGCGCCTG TTCGTGGCCG TGGCCGACCA CGGCAGCATC
AGCGAAGGCG CCAAGCGCTG CCACATCGCG CTCGCGGCCG CGAGCAAGCG CATCTCCGAC
CTCGAGGCCC GCGCGCGGCT GCCGCTGCTG GTGCGCCATG CGCGTGGCGT GACGCTCACT
TCGGCGGGCC ACGGCCTGCT GCTGCATGCG CGCGCCGTGC TCTCGGCCAT GGACCGGCTG
GGCGCCGAGC TCGACGACTT CCAGAACGGC GTGGCGGGCG TGGTCAGCAT CACGGCCAAC
GCGTCCACCA TCGCGCAGTT CCTGCCCGCG CAGATCGGCT CCTTCCTGCG GCTGCATCCG
GTGCTCAAGA TCGACCTGCA GGAGCGCGCC AGCACCGAAG TGGTGAAGGC CGTGCAGGCC
GGCCTGGCCG ACATCGGCGT GATCGAGGGC AACACGCCCG CCGACATGCT CGAATGCCTG
TCCTACCGCA GCGACGAACT GGCCGTGGTG GTGGCGCGCG ACCATCCGCT GGCCAGGCGC
AAGCGCATCG GCGTGGAGGA GGTGCTGCGG CACGACCATA TCGTGGTGCG CGAAGGCACG
GCGCTGCACC GCGTGCTGCT GAACGCGGCG CTGGAGGCGC AGCTGCCGCT CAAGGTGCGC
ATGCAGGTGG GCAGCTTCGA CATGGTGTGC CGCATGGTGG AGCAGGGCGT GGGCATCGGC
GTGCTGCCTT ATGCGGCCAT CCTGCCGCAG CTGCAGATAC TGAAGCTGCG CTGCCTGAAG
CTCGATGCGC CGTGGGCGGT GCGCCGCCAC CTGCTGTGCG TGCGGCGGCA GCAGGACCTG
ACCGCGGCCG CGCGCTCGGT GCTGGAGCAC CTCGGCCGGC CGGACTGA
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| Protein sequence | MSADLKSLRL FVAVADHGSI SEGAKRCHIA LAAASKRISD LEARARLPLL VRHARGVTLT
SAGHGLLLHA RAVLSAMDRL GAELDDFQNG VAGVVSITAN ASTIAQFLPA QIGSFLRLHP
VLKIDLQERA STEVVKAVQA GLADIGVIEG NTPADMLECL SYRSDELAVV VARDHPLARR
KRIGVEEVLR HDHIVVREGT ALHRVLLNAA LEAQLPLKVR MQVGSFDMVC RMVEQGVGIG
VLPYAAILPQ LQILKLRCLK LDAPWAVRRH LLCVRRQQDL TAAARSVLEH LGRPD
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