| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1305 |
|---|
| Symbol | |
|---|
| ID | 7972986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1421334 |
|---|
| End bp | 1422239 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791903 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002943222 |
|---|
| Protein GI | 239814312 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.602522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAG GAAAAGTAGT CGTCGTCACC GGCGCGGGCG GTGGCATCGG GCGCGACATC
GCGCTGGCCA TGGCGAGCCA TGGCGCCAAG GTGGTGGTGA ACGACATCGG CGCGGCCCTT
GATGGTGCGG GCGGCAGCGC CGGCCCCGCG CAGCAGGTGG TCGACGAGAT CCGCGCCGCG
GGCGGCCAGG CGGTGCCCAA CACCGACAGC GTGGCTGATG CAGCCAGCGC GGCGCGCATC
GTCGAATGCG CGGTCGAGAG CTTCGGACGC ATCGATGCGG TGGTCAACAA CGCCGGCATC
CTGCGCGACC GGTTCTTCCA CAAGATGTCG GTCGACGAGT GGGACGCCGT GCTCAAGGTG
CACCTGTACG GCGCCTACTA CGTGAGCCGC GCGGCCGCCA CGCACTTCAA GGAGCAGAAC
TCGGGCGCGA TGGTGCACAT GACCTCGACC TCGGGCCTCA TCGGCAACTA CGGCCAGGCC
AACTATGCGG CGGCCAAGCT CGGCATCGTG GCGCTGTCGA AGTCGATCGC GCTCGACATG
CTCAAGTTCA ACGTGCGCTC CAACTGCATC GCACCGTTTG CATGGAGCCG CATGATCGGC
GCCATTCCCA CCGACACCGA CGAGCAGCGC GCCCGCGTCG ACAAGATCAA GCAGATGACG
CCCGCCAAGG TGGCGCCGCT CGCGGTGTAC CTGGCAAGCG ATGCGGCCGG CGCGGTCAAC
GGCCAGATCT TCTCGGTGCG CAACAACGAG ATTTCGCTCA TCAGCCAGCC GCGGCCGGTG
CGCTCCATTC ATCGCTCCGA GGGCTGGACG CCGCAGAGCA TTGCCGAGCA CGCCATGCCC
GCCATGCGCG CGAGCTTCCA TCCGCTGGAC CGCTCGGCCG ACGTGTTCAG CTGGGACCCG
GTCTGA
|
|---|
| Protein sequence | MVEGKVVVVT GAGGGIGRDI ALAMASHGAK VVVNDIGAAL DGAGGSAGPA QQVVDEIRAA
GGQAVPNTDS VADAASAARI VECAVESFGR IDAVVNNAGI LRDRFFHKMS VDEWDAVLKV
HLYGAYYVSR AAATHFKEQN SGAMVHMTST SGLIGNYGQA NYAAAKLGIV ALSKSIALDM
LKFNVRSNCI APFAWSRMIG AIPTDTDEQR ARVDKIKQMT PAKVAPLAVY LASDAAGAVN
GQIFSVRNNE ISLISQPRPV RSIHRSEGWT PQSIAEHAMP AMRASFHPLD RSADVFSWDP
V
|
|---|
| |