Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1288 |
Symbol | |
ID | 7973212 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1404289 |
End bp | 1405218 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644791885 |
Product | inner-membrane translocator |
Protein accession | YP_002943205 |
Protein GI | 239814295 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAATAT TGCTGCAGCA GATCATCAAC GGTCTGGTCC TGGGCAGCAT GTATGCCTTG ATAGCCTTGG GCTACACCAT GGTGTACGGC ATCATCAATC TGATCAATTT TGCGCACGGC GAAGTGCTGA TGGTGGGGGC GCTCACGAGC TGGACCATCA TCGGGCTCAT GAAGGAATCC ATGCCCGGCA CGCCCGGCTG GCTGATCCTC ATCATCGCGC TGATCATCGC CTGCATCGTT GCAGCCACGC TCAACTTCGT GATCGAGAAG GTCGCCTACC GGCCGCTTCG CAACAGTCCC AAGCTCGCAC CGCTCATCAC GGCCATCGGC ATGTCGATCC TGCTGCAGAC GCTGGCCATG ATCATCTGGA AGCCCACCAA CAAGGCCTAT CCCAACCTGC TGTCGACCAC GCCCATCGAG GTGGGCGGCG CGGTGATCTC GCCCACGCAG GTCATGATCC TGAGCGTCAC GGCGTTCTCG CTCGTGGTGC TGATGTGGCT GGTCAACTAC ACCAAGCTCG GCCGCGCGAT GCGCGCCACC GCCGAGAACC CGCGCGTCGC GGCGCTGATG GGCATCCGGC CCGACATGGT CATTTCGGCC ACCTTCATCA TCGGTGCCGT GCTCGCGGCC ATCGCGGGCG TCATGTACGC CTCCAACTAC GGCATCGCGC AGCACGCGAT GGGCTTCCTG CCCGGCCTCA AGGCCTTCAC CGCGGCGGTG TTCGGCGGCA TCGGCAACCT GGCCGGCGCG GTGGTCGGCG GCATCCTGCT CGGGCTGATC GAAGCCATCG GCTCCGGCTA CATCGGCACC CTCACGGGTG GCGTGCTGGG CAGCAACTAC AGCGACATCT TCGCTTTCAT CGTGTTGATC GTCATGCTCA CGCTGCGGCC CTCGGGCCTG CTCGGCGAGC GCGTGGCGGA TCGGGCCTGA
|
Protein sequence | MEILLQQIIN GLVLGSMYAL IALGYTMVYG IINLINFAHG EVLMVGALTS WTIIGLMKES MPGTPGWLIL IIALIIACIV AATLNFVIEK VAYRPLRNSP KLAPLITAIG MSILLQTLAM IIWKPTNKAY PNLLSTTPIE VGGAVISPTQ VMILSVTAFS LVVLMWLVNY TKLGRAMRAT AENPRVAALM GIRPDMVISA TFIIGAVLAA IAGVMYASNY GIAQHAMGFL PGLKAFTAAV FGGIGNLAGA VVGGILLGLI EAIGSGYIGT LTGGVLGSNY SDIFAFIVLI VMLTLRPSGL LGERVADRA
|
| |