| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1271 |
|---|
| Symbol | |
|---|
| ID | 7973195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1386404 |
|---|
| End bp | 1387192 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791868 |
|---|
| Product | Enoyl-CoA hydratase/isomerase |
|---|
| Protein accession | YP_002943188 |
|---|
| Protein GI | 239814278 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0748368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA CGACTTCTCC CTTCGTGCTG GCGACACGCG ATGCGCGCGG CGTGGCCACG
CTGACGCTGA ACCGCCCGGC CTCGTTCAAC GCCCTCTCCG AAGGCATGCT CGGCGCGCTC
GAACAGGCGC TCGCTGACAT TGCGGCCGAC GACACCGTGC GCGCCGTCGT CATCGCGGCA
GCGGGCAAGG CCTTCTGCGC GGGCCACGAC CTGAAGGAAA TGCGCGCCGA ACCCTCGCTC
GGCTACTACC AGCGGCTCTT CGAGCGCTGC GGCGCGATGA TGCTGTCGAT CCAGCGCCTG
CCCGTGCCGG TGATCGCGCG CGTGCACGGC ATCGCCACGG CCGCGGGCTG CCAGCTGGTC
GCGGTGTGCG ATCTGGCGGT GGCCTCGAGC GAGGCGCGCT TCGCGGTCAG CGGCGTGAAC
GTGGGCCTGT TCTGCGCCAC GCCGAGCGTC ACGCTGTCTC GCAATCTCGG CCGCAAGCAG
GCCTTCGAGA TGCTGGTGAC CGGCGAATTC ATCGGCGCGG AGGAAGCCCG CGAGAAAGGC
CTGGTCAACC GGGTGGCGCC GCCCGGCGAG CTCGACGCCG CGGTGGAGGC GCTGGTGGCC
AGCATCGTCG CCAAGCCGCG CCAGGCGCTC GCGCTCGGCA AGGCGCTGTT CTATCGGCAG
CTCGAAACCG GCATAGAGGC CGCGCTGGCC GACGCCAGCC AGACCATGGC CTGCAACATG
ATGGACGAGA GCGCGCTGGA AGGCGTGCAG GCCTTCATCG AGAAGCGCCC GCCCGGCTGG
AAGCGCTAG
|
|---|
| Protein sequence | MNDTTSPFVL ATRDARGVAT LTLNRPASFN ALSEGMLGAL EQALADIAAD DTVRAVVIAA
AGKAFCAGHD LKEMRAEPSL GYYQRLFERC GAMMLSIQRL PVPVIARVHG IATAAGCQLV
AVCDLAVASS EARFAVSGVN VGLFCATPSV TLSRNLGRKQ AFEMLVTGEF IGAEEAREKG
LVNRVAPPGE LDAAVEALVA SIVAKPRQAL ALGKALFYRQ LETGIEAALA DASQTMACNM
MDESALEGVQ AFIEKRPPGW KR
|
|---|
| |