| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1265 |
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| Symbol | |
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| ID | 7973189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1378873 |
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| End bp | 1379886 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791862 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002943182 |
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| Protein GI | 239814272 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCTTC GTATTTCCCG CATGGCTCGC CTCGGCCTGA TCGCCGCCGC GCTCGTTGCC
GCTGGCAGCA CCATGGCCCA GACCGCCATT TGCTACAACT GCCCCACCGA GTGGGCCGAC
TGGGGCACGC AGCTCAAGGC CATCAAGGCC AAGACCGGCA TCACCGTGCC GGCCGACAAC
AAGAACTCGG GCCAGTCGCT CGCACAGCTG GTGGCCGAGA AAGCGAGCCC CGTGGCCGAC
GTCACCTACC TGGGCGTGAC CTTCGCGGTG CAGGCGCAGA AGGAAGGCGT GGTCGAGCCC
TACAAGCCGG CCGCGTGGAA GGACATCCCC GACGGCCTGA AGGACCCGGC GGGCAACTGG
TTCACCATCC ACTCGGGCAC GCTCGGCTTC ATGGTCAACG TCGATGCGCT CAAGGGCAAG
CCGATTCCGA AGTCGTGGGC CGACCTGCTC AAGCTCGAAT ACAAGGGCCT GATCGGTTAC
CTCGATCCGG CCTCGGCCTT CGTGGGCTAT GTGGGCGCGG TGGCGGTGAA CGAGGCACGC
GGCGGCACGC TCGACAACTT CGCGCCGGCC ATCGACTACT TCAAGGCGCT GCAGAAGAAC
GAGCCCATCG TGCCCAAGCA GACTTCCTAC GCGCGCGTGC TGTCGGGCGA GATCGCGATC
CTGCTGGACT ACGACTTCAA TGCCTACCGC GCCAAGTACA AGGACAAGGC CAACGTCGCC
TTCGTCATTC CGAGCGAAGG CACCTTGGCC GTGCCCTACG TGATGAGCCT GGTCGCCAAG
GCGCCGCATG CGGCCGAGGG CAAGAAGGTG CTCGACTTCG TGCTGTCCGA CGAGGGGCAG
GCGATCTGGG CCAAGGCCTA TCTGCGGCCG GTGCGTGCGA GCGCCATGCC CAAGGACATC
GAGGCGCAGT TCCTGCCTGC TACCGAATAC GCCCGCGCCA AGAGCGTCGA TTACGCCCGC
ATGGCCGAGG CGCAGCGTGC GTTCTCTGAT CGTTACCTCA AGGAAGTGCG CTGA
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| Protein sequence | MSLRISRMAR LGLIAAALVA AGSTMAQTAI CYNCPTEWAD WGTQLKAIKA KTGITVPADN
KNSGQSLAQL VAEKASPVAD VTYLGVTFAV QAQKEGVVEP YKPAAWKDIP DGLKDPAGNW
FTIHSGTLGF MVNVDALKGK PIPKSWADLL KLEYKGLIGY LDPASAFVGY VGAVAVNEAR
GGTLDNFAPA IDYFKALQKN EPIVPKQTSY ARVLSGEIAI LLDYDFNAYR AKYKDKANVA
FVIPSEGTLA VPYVMSLVAK APHAAEGKKV LDFVLSDEGQ AIWAKAYLRP VRASAMPKDI
EAQFLPATEY ARAKSVDYAR MAEAQRAFSD RYLKEVR
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