| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1255 |
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| Symbol | |
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| ID | 7973179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1368960 |
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| End bp | 1369910 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791852 |
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| Product | protein of unknown function DUF6 transmembrane |
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| Protein accession | YP_002943172 |
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| Protein GI | 239814262 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.813345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGT CCGCCGTACA GACCGGCATT CCCCCTTCTT CAGCCAGCGG CGCAAGGAGC
CTTGCGCCCG GCCTCATCCT CGCCTCGCTC GGCGCGGTCG CGTTCAGCGG CAAGGCCATC
ATCGTGAAGC TGGCCTACCG CTACGGCGTG GATGCGATCA CGCTGATCAT GCTGCGCATG
CTGTTCGCGC TGCCGCTGTT CGCGGTGATG GCGTGGTGGG CCGGCCGCGG CAAGCCCGCG
CTCACCTTGC GCGACTGGTT CGGCGTGGCC GGGCTCGGCT TCTCGGGCTA CTACCTGGCG
AGCTTTCTCG ACTTTGCGGG GCTCGCCTAC ATCTCGGCCA GCTTCGAGCG GCTCATTCTC
TATCTCAACC CCACGCTGGT GCTGCTGTTC GGCTGGCTCC TGTACCGGCG GCGCGCCACG
CGGCCGCAGG TGCTCGGCAT GATCGTGAGC TATGCCGGCG TGCTGCTCGT GTTCGGGCAC
GAGCTCTGGA TCGGCGGCGG CGGCAAGGGC GGCGGCGCGG CGGCCTGGGG CACCTTCCTC
GTGTTCCTGA GCGCCGTGAG CTATGCGGCC TACCTTGTCT ACAGCGGCGA ATTCGTCAAG
CGCCTGGGCT CGCTGCGGCT CGTGGGGCTG GCCACCACCG TGGCCTGCCT GCTGTGCATC
CTGCAGTTCG CGCTGACGCG GCCGGTGAGC GCCGCAATGC AGGTGGCGCC CGAGGTCATC
TGGCTGTCGG TGCTCAACGC CACGCTGTGC ACGGCGGTGC CTGTCCTCAT GGTCATGATG
GCCATCGAGC GCATCGGCCC GGCCATGGCC GCGCAAACCG GCATGATCGG GCCGCTGTCG
ACCATCCTCA TGGGCGTGGT CATACTCGGC GAGCCGTTCA CCGCGTGGAT CGCGGCCGGC
ACGGTGCTCG TGATTGCGGG CATCTTCGTT TTCACACGCA CGGGGCGCTA G
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| Protein sequence | MTKSAVQTGI PPSSASGARS LAPGLILASL GAVAFSGKAI IVKLAYRYGV DAITLIMLRM
LFALPLFAVM AWWAGRGKPA LTLRDWFGVA GLGFSGYYLA SFLDFAGLAY ISASFERLIL
YLNPTLVLLF GWLLYRRRAT RPQVLGMIVS YAGVLLVFGH ELWIGGGGKG GGAAAWGTFL
VFLSAVSYAA YLVYSGEFVK RLGSLRLVGL ATTVACLLCI LQFALTRPVS AAMQVAPEVI
WLSVLNATLC TAVPVLMVMM AIERIGPAMA AQTGMIGPLS TILMGVVILG EPFTAWIAAG
TVLVIAGIFV FTRTGR
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