| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1249 |
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| Symbol | |
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| ID | 7973173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1361255 |
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| End bp | 1363042 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791846 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002943166 |
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| Protein GI | 239814256 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCTG TTTCCGCCCC CGCATCCCTG GCCGCCCGCC ACGAAGGCCC GCTCGACCTG
CGCCGCCTGA TCGAATGGCT CGCCGCCGAC GGCGTGATTT CTCCGGTGGA AGCCAAGCGC
ACCATCGCGC GCTGTGCCCA GGCCGAGAGC CGGCAGGCGC CGCTGGTGCG GCTGGCCAAC
GTGGCCATGA CGCGCGAGAG CGACGGCAAG CCGCTCGACC TCGAAATGCT CACGCAGTGG
CTCTCCGGTC GCGCCGGGCT TGCCTACCTG CGCATCGATC CGCTCAAGGT CGACGTGGGC
AAGGTCGCCG ACACCATGAG CGCGGCCTAC GCCGAGCGCC ACAAGGTGCT GCCGGTGCAG
GTGCTGCCCA ACGAGGTGGT GGTGGCCACG GCCGAACCGT TCCTGACCGA CTGGATCGCC
GAGGTGGAGC GCCAGTCGCG CCGCACCGTG CGCCGCGTGG TGGCCAACCC GACCGACATC
CAGCGCTACA CGGCCGAGTT CTTCGCGCTC GCCAAGTCGG TGCGCGCCGC GCAGAAGGCC
GGCGGCAACA CCGGCGGTGC GAGCTTCGAG CAGCTGGTGG AACTGGGCAA GAGCACCAAG
CAGCTCGACG CCAACGACCA GAGCGTGGTG CAGGTGGTCG ACTGGCTCTG GCAATACGCC
TTCGACCAGC GCGCGAGCGA CATCCACCTG GAGCCGCGGC GCGAGCAGGG CGTGATCCGC
TTTCGCATCG ACGGCATCCT GCACCCGGCC TACCAGATGC CCATGGGCGT GATGAACGCC
ATGGTGTCGC GCATCAAGCT GCTGGGCCGC ATGGACGTGG TCGAGAAGCG CCGCCCGCTC
GACGGCCGCA TCAAGACGCG CAACATGCGC GGCGACGAAG TCGAAATGCG CCTTTCCACC
CTGCCGACCG CCTTCGGCGA GAAGATGGTG ATGCGCATCT TCGACCCCGA CACCGCGGTG
AAGGACCTCG ACGCGCTCGG CTTCGCGCAG CACGACGCGC AGCGCTGGGA GCAGCTCGTC
ACGCGGCCCA ACGGCATCAT CCTGGTGACC GGGCCCACGG GCTCGGGCAA GACCACCACG
CTGTACTCCA CGCTCAAGCG CGTGGCCACC GAAGAGGTCA ACGTGAGCAC GGTGGAAGAC
CCGATCGAGA TGATCGAGCC TTCGTTCAAC CAGACGCAGG TGCAGCCGCA GCTCGATTTC
GGTTTTACCG AAGGCCTGCG CGCGCTGATG CGGCAGGACC CGGACATCAT CATGGTCGGC
GAGATCCGCG ACCTTGCCAC GGCCGAGATG GCGGTGCAGG CCGCGCTCAC CGGCCACCTG
GTGTTCAGCA CGCTGCACAC CAACGACGCG CCAAGCGCCA TCACGCGGCT GATGGAACTC
GGCGTGCCTT CCTACCTCAT CAACGCCGTG ATGCTCGGCG TGCTGGCCCA GCGGCTGGTG
CGCACGCTGT GCCCCAACTG CAAGCAGCCC GACGACACGG TCACGCGCGA GAAGCTCGAG
ACCATCGTCA AGCCCTGGCA GATCACCGGT TCGGTGCGCG CCTACAAGCC CGTGGGCTGC
GTCGACTGCC GCATGACCGG CTACATGGGC CGCATGGGCC TGTACGAGCT GCTGAGCATC
AGCGAGGACT TCAAGGCCCA GGTCACCAAG GAGCCCAACC TGGCCGGGCT GCGCCGCCAG
GCCGTGATCG ACGGCATGCG CCCGCTGCGC CTGGCCGGGG CGCTGCGCAT CGCCGAAGGC
GTCACCACCA TCGAGGAAGT GCTGAGCGCG ACGCCGCCGC TGGAGTGA
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| Protein sequence | MSAVSAPASL AARHEGPLDL RRLIEWLAAD GVISPVEAKR TIARCAQAES RQAPLVRLAN
VAMTRESDGK PLDLEMLTQW LSGRAGLAYL RIDPLKVDVG KVADTMSAAY AERHKVLPVQ
VLPNEVVVAT AEPFLTDWIA EVERQSRRTV RRVVANPTDI QRYTAEFFAL AKSVRAAQKA
GGNTGGASFE QLVELGKSTK QLDANDQSVV QVVDWLWQYA FDQRASDIHL EPRREQGVIR
FRIDGILHPA YQMPMGVMNA MVSRIKLLGR MDVVEKRRPL DGRIKTRNMR GDEVEMRLST
LPTAFGEKMV MRIFDPDTAV KDLDALGFAQ HDAQRWEQLV TRPNGIILVT GPTGSGKTTT
LYSTLKRVAT EEVNVSTVED PIEMIEPSFN QTQVQPQLDF GFTEGLRALM RQDPDIIMVG
EIRDLATAEM AVQAALTGHL VFSTLHTNDA PSAITRLMEL GVPSYLINAV MLGVLAQRLV
RTLCPNCKQP DDTVTREKLE TIVKPWQITG SVRAYKPVGC VDCRMTGYMG RMGLYELLSI
SEDFKAQVTK EPNLAGLRRQ AVIDGMRPLR LAGALRIAEG VTTIEEVLSA TPPLE
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