| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1248 |
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| Symbol | |
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| ID | 7973172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1360476 |
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| End bp | 1361258 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791845 |
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| Product | hypothetical protein |
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| Protein accession | YP_002943165 |
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| Protein GI | 239814255 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACGA GCAAAACTCC CGTTCTCCCC GAAGTCAACT TTTCCGATTG GGGCGACATC
CGCTACCTGC ACCTGGGCAC CGAATGGGTC CAGGGCTCGA TGAAGCTCGA CGCGCCGTTC
GAGATCGAAC TCGAATACGT GCAGCGCATG ATGGCCTGGC TGCTGTTCGC CGACCCCAAG
AGCGTGGCCA GCCGCCATGC CATGCAGCTG GGCCTCGGCG CGGCCACGCT CACCAAGTTC
TGCCGCAAGA CGCTGCGCAT GCGCACCACC GCGGTGGAGC TGAATCCGCA GGTGGTGTCG
GCCTGCCGCG GCTGGTTCAA GCTGCCGGCC GACGACCCGA AGCTGCGCGT GGTCATTGCC
GATGCTGCGC AGGAGATCCG CAAGCCCGAA TGGCAGGGCA CGGTCGATGC GCTGCAGGTC
GACCTCTACG ACCATGAAGC CGCCGCGCCG GTGCTCGACA GCGAAGACTT CTACGCCGAC
TGCCGCGCGC TGCTCACCGA GGACGGCTGC ATGACGGTCA ATCTCTTCGG CCGCTCGTCG
AGCTACGAGC GCAGCCTCGA GAAAATCGCC GGTGCATTCG GCGCCGATGC GGTCTGGGCC
TTCAAGCCGA CGCGCGAAGG CAACACGGTG GTGCTGGCGC AGCGCGCACC CAGCCGGCCC
AAGCGCGAAG CCCTTGCCGA GCGCGCCCAA ACGATCCAGA CTCGATGGGC CCTGCCCGCG
CCCAAATGGC TGCGCGTGTT CAAACCGCTG AATCCCACCC TCACCCGACC GTCCGGCCCA
TGA
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| Protein sequence | MATSKTPVLP EVNFSDWGDI RYLHLGTEWV QGSMKLDAPF EIELEYVQRM MAWLLFADPK
SVASRHAMQL GLGAATLTKF CRKTLRMRTT AVELNPQVVS ACRGWFKLPA DDPKLRVVIA
DAAQEIRKPE WQGTVDALQV DLYDHEAAAP VLDSEDFYAD CRALLTEDGC MTVNLFGRSS
SYERSLEKIA GAFGADAVWA FKPTREGNTV VLAQRAPSRP KREALAERAQ TIQTRWALPA
PKWLRVFKPL NPTLTRPSGP
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