Gene Vapar_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1240 
Symbol 
ID7973164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1353565 
End bp1354200 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID644791837 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002943157 
Protein GI239814247 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.567777 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCGTG GAAGATCCGC CACCTATGAC GACCAGCGCG AGTTCATCCT TGCGCAGGCC 
GCCCAGCTGT TCGCGCGCCG CGGCTATCCC GCCACCTCGA TGAACCAGGT GGCCGAGGCC 
TGCAATCTCT CGAAGGCCAC GCTCTACCAC TACTACAAGG ACAAGAGCAG CCTCCTGATC 
AGCATCGCCG AGACGCATGT GTCCAAGCTC GCCGCGCTGG TGGCCGAGGA AGAGGCCTCG 
ACTCACACTG ACGAGGAGCG CCTGCGCCGC TTCATCTACC GCATCGTCGA GGAATACGCC 
GGCGCACAGG ACGCCCACCG CGTGCTGACC GACGACGTGC GCTTTCTGGA AGAAGAAGAC 
CGCGAGCGCG TGCTGAACCA GGAGCGCGAA GTGGTGGCGG GGTTTGCGCG TGCCGTGTCG 
GCCTTGCGGC CGGGCGCGCC GAGCGACGAC CTCGCCAAGC CGCTGACCAT GCTGCTGTTC 
GGCATGATCA ACTGGATGTT CACCTGGATG AAGCCCGGCG GCCGGCTCGA CCATGCGTCC 
ATTGCGCCGA TCGTGGCCGA CCTGTTCCTG GGCGGCATCG GCGCGGTGAA GTCGCCGCCA 
GCACCCCAGC TGGATTCCGT CAAAGAATCC GGTTGA
 
Protein sequence
MPRGRSATYD DQREFILAQA AQLFARRGYP ATSMNQVAEA CNLSKATLYH YYKDKSSLLI 
SIAETHVSKL AALVAEEEAS THTDEERLRR FIYRIVEEYA GAQDAHRVLT DDVRFLEEED 
RERVLNQERE VVAGFARAVS ALRPGAPSDD LAKPLTMLLF GMINWMFTWM KPGGRLDHAS 
IAPIVADLFL GGIGAVKSPP APQLDSVKES G