Gene Vapar_1239 details

Gene Information

• Locus tag: Vapar_1239
• ID: 7973163
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1352898
• End bp: 1353500
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644791836
• Product: phenylacetic acid degradation protein PaaY
• Protein accession: YP_002943156
• Protein GI: 239814246
• COG category: [R] General function prediction only
• COG ID: [COG0663] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
• TIGRFAM ID: [TIGR02287] phenylacetic acid degradation protein PaaY

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.55157
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAGCT ACTCCATCGA CGGCGTGATT CCCGTCGTCG ACCCGACGGC TTATGTGCAC 
CCCAGCGCCG TGCTGATCGG CGACGTGATC GTCGGGCCCG GCTGCTATGT CGGCCCCTGC 
GCCAGCCTGC GCGGCGATTT CGGCCGCATC GTGCTGCAGG AGGGCTCCAA CGTGCAGGAC 
CACTGCTGCA TCCACGGTTT TCCGGACCAG GACACGGTGG TCGAGGTCAA CGGCCACATC 
GGCCACGGCG CGATCCTGCA CAGCTGCATC GTGCGGCGCG ATGCGCTGGT GGGCATGAAT 
GCGGTGGTGA TGGACGAGGC CGAGATCGGC GAGCAGGCCA TCGTGGCGGC CTGCGCCTTC 
GTGCCGGCCG GCATGAAGGT GCCGGCGCGC TCGCTGGTGG CGGGCATTCC GGCCAAGGTG 
AAGAAGATGC TGAGCGAGGA AGAAATCGCC TGGAAGCTCG AAGGCACGCA GACCTACCAG 
GCGCTCACCG TGCGCAGCCT GGCCAGCCTG CGCGAGGTCG CGCCGCTGCA GCAGACGGAA 
CCCGGCCGCC CGCGCCTGCC CGCCACCGAG GTGCGCTCGC TGATCGCGAC GCGGCGCGGC 
TAG 

 

Protein sequence

MPSYSIDGVI PVVDPTAYVH PSAVLIGDVI VGPGCYVGPC ASLRGDFGRI VLQEGSNVQD 
HCCIHGFPDQ DTVVEVNGHI GHGAILHSCI VRRDALVGMN AVVMDEAEIG EQAIVAACAF 
VPAGMKVPAR SLVAGIPAKV KKMLSEEEIA WKLEGTQTYQ ALTVRSLASL REVAPLQQTE 
PGRPRLPATE VRSLIATRRG