| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1234 |
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| Symbol | paaB |
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| ID | 7973158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1348487 |
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| End bp | 1348783 |
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| Gene Length | 297 bp |
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| Protein Length | 98 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791831 |
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| Product | phenylacetate-CoA oxygenase subunit PaaB |
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| Protein accession | YP_002943151 |
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| Protein GI | 239814241 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3460] Uncharacterized enzyme of phenylacetate metabolism |
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| TIGRFAM ID | [TIGR02157] phenylacetate-CoA oxygenase, PaaH subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.849517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCGCCG ATATCCAGCA AGAGTGGCCC TTGTGGGAAG TGTTCGTGCG CAGCAAGGCC
GGTCTCGACC ACAAGCATTG CGGCAGCCTG CACGCGGCCG ATCCGAAGAT GGCGATCCAG
ATGGCGCGCG ACGTCTACAC GCGCCGCCAG GAAGGCAGCA GCATCTGGGT GGTGCGCTCG
GACCAGATCG TGGCGAGCGA CCCGGGGGAC AAGGACATGT TCTTCGATCC GGCGGAGGAC
AAGGTGTACC GGCATCCGAC CTTCTACAAG TTGCCCAAGT CCGTGGACCA CATGTGA
|
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| Protein sequence | MSADIQQEWP LWEVFVRSKA GLDHKHCGSL HAADPKMAIQ MARDVYTRRQ EGSSIWVVRS
DQIVASDPGD KDMFFDPAED KVYRHPTFYK LPKSVDHM
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