Gene Vapar_1228 details

Gene Information

• Locus tag: Vapar_1228
• ID: 7973152
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1341870
• End bp: 1343765
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791825
• Product: ABC transporter related
• Protein accession: YP_002943145
• Protein GI: 239814235
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAACA CCCCGTCCAG CACCACTGCA ACCGCCGCCG CACCGGCCGG CCGCGCGCTG 
GTCACGCCCC GGCAGCTGAC GCTCGCCTGC GTGGCGGCGC TGGCCCTCGC CTGGGGCTTC 
CTGCCGGAGT TCACGGTCTC GGTCCTCAGC AACATCGGGC TCTATGCGCT GGTCGCGGCC 
GGGCTGGTGA TGCTCACCGG CGTGGGCGGC ATGACCTCCT TCGGCCAAGC CGCATTCGTC 
GGCATGGGTG CCTACGCCAC CGCGTGGATC TGCACCTCGC CCATGGCCGC CGCATGGCTG 
GGCGGCGCCG TGGGCCCCGC GCTGCTGCCG TGGGCCGGGC TGATGCTCGG CCTCGCCTTC 
ACCTTTGCGC TGGCCTGGGC GCTGGGCGCG GTCACGCTCA AGCTGCAGGG CCACTACCTG 
CCGCTGTGCA CCATCGCCTG GGGCCTGAGC CTGTACTACC TGCTCGGCAA CATGGACTTC 
CTCGGCGGGC AGACGGGCAT CACCGGCGTG CCGCCATTGG TGATTGCCGG CTACTCGCTG 
GCCACGCCGC GCGCGCTGGG CGTGGTGATC TGGGCCGTGC TGCTGCTCGC GCTGTGGGCC 
ATGCACAACC TGCTCGACTC GCGCGAAGGC CGGGCCATCC GCGCGCTCAA GGGCGGCCGG 
CTGATGGCCG AGTCGATGGG TGTGGACACC GCCCGCCACC GCGTGAAGCT GTTCGTGCTG 
GCTGCGCTGC TGGCGGCCGT CTCGGGCTGG CTCTATGCGC ACCTGCAGCG CTTCGTGAAT 
CCGACGCCCT TCAACCTGAA CATCGGCATC GAGCTGCTGT TCATGGCGGT GGTGGGCGGC 
GCGGGCCACC TGTGGGGTGC GGTGCTGGGC GCCGCGCTCA TCACGCTGCT GAAGGAAAAG 
CTGCAGGACG TGCTGCCATC GCTGCTGGGC AGCAGCGGAA ACTTCGAAGT GATCGTGTTC 
GGCCTGCTCA TGCTGTTCGT GCTGCAGCGC TTTGCGGACG GCCTGTGGCC CACGCTCGCG 
CGCATCGCCA GCCGCTGGGT GCGCCCACAT GCCCCGGCCG CGAGCCCTAC CGCGCCGGCC 
GTGCAGCTCG CGCACCGCAA CCTGCCCGCC CGGGGCGAGG TGCTGCTGCA GGCCACCAAG 
GTCAGCAAGC GCTTCGGAGG CCTGGTGGCC AACAACGACA TCTCGATGAC ACTGAAGGCC 
GGCGAGATCC ATGCGCTGAT CGGACCGAAC GGCGCGGGCA AGAGCACCTT CTTCAACATG 
GTCTCGGGCG TGGACGATCC GAGCGCCGGC GAAGTGCGGC TCGCGGGCCA GGCGATGACG 
GCCAGGCCCT CGCGCGTGTT CGCCGCGCTG GGCCTGGGCC GCACCTTCCA GCATGTGCGC 
CTGCTCGGTG CGCGCAGCGT GGCCGAGAAC GTGGCGCTCG GCGCCCACCT GCGCGCCCGG 
CGCGGCTGGC TCGCCGCGAT GCTGCGGCTG GACCGCGCCG AGGAAGCCGC GCTGATGGCC 
GAGGCGCGCC GCCAGATCGA GCGCTGCGGC CTCGGCGCGC ATGCCGACAC GCCGGCCGCA 
TCGCTCTCGC TGGGCCAGCA GCGCGTGGTC GAGATTGCAC GCGCGCTGGC CGGCCAGCCT 
TCGGTGCTGC TGCTCGACGA GCCCGCCGCG GGCCTGCGCC ACCTTGAGAA GCGCGCGCTT 
TCGGTGCTGC TGGACCAGCT GCGCGCCGAA GGCCTGGGCA TCCTCGTGGT GGAGCACGAC 
ATGGAATTCG TGATGAACCT GGCCGACCGC ATCACGGTGC TCGAATTCGG CACCGTGATC 
GCCACCGGCA CGCCGGCCGA AGTGCAGGCC AATCCGCGCG TGCTCGAAGC CTACCTGGGC 
GGTGCCGACG ACGAACTGCT GGAGGACGCA AGATGA 

 

Protein sequence

MNNTPSSTTA TAAAPAGRAL VTPRQLTLAC VAALALAWGF LPEFTVSVLS NIGLYALVAA 
GLVMLTGVGG MTSFGQAAFV GMGAYATAWI CTSPMAAAWL GGAVGPALLP WAGLMLGLAF 
TFALAWALGA VTLKLQGHYL PLCTIAWGLS LYYLLGNMDF LGGQTGITGV PPLVIAGYSL 
ATPRALGVVI WAVLLLALWA MHNLLDSREG RAIRALKGGR LMAESMGVDT ARHRVKLFVL 
AALLAAVSGW LYAHLQRFVN PTPFNLNIGI ELLFMAVVGG AGHLWGAVLG AALITLLKEK 
LQDVLPSLLG SSGNFEVIVF GLLMLFVLQR FADGLWPTLA RIASRWVRPH APAASPTAPA 
VQLAHRNLPA RGEVLLQATK VSKRFGGLVA NNDISMTLKA GEIHALIGPN GAGKSTFFNM 
VSGVDDPSAG EVRLAGQAMT ARPSRVFAAL GLGRTFQHVR LLGARSVAEN VALGAHLRAR 
RGWLAAMLRL DRAEEAALMA EARRQIERCG LGAHADTPAA SLSLGQQRVV EIARALAGQP 
SVLLLDEPAA GLRHLEKRAL SVLLDQLRAE GLGILVVEHD MEFVMNLADR ITVLEFGTVI 
ATGTPAEVQA NPRVLEAYLG GADDELLEDA R