Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1219 |
Symbol | |
ID | 7973389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1332030 |
End bp | 1333343 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644791816 |
Product | alanine racemase domain protein |
Protein accession | YP_002943136 |
Protein GI | 239814226 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3616] Predicted amino acid aldolase or racemase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACCA TGACCGACAC CACCGCCGAC CCGGAATTCA ACGACCCGCT GCTGGGCAGC AACTTCAAGG GCTACCCGCG CACCCAGCCG CCGCGCCGCC GCAGCGAAGT CGGCGCCGCG GGATGGAACG TGCTCGCGGG CGACCTGCCG CTGCCGCTGG CCGTACTCAA GCGCGAGGCG CTCGAGCACA ACCTGGCCTG GATGCAGTCG CGCGTACGCG CCTGGGGCAT CGACCTGGCG CCGCACGGCA AGACCACCAT GTCGCCGCAG CTCTTCCGGC GCCAGCTCGA CGCCGGCGCC TGGGGCCTGA CCTTCGCCAC CGTCACGCAG CTGGCGGTGG GCGTGGCCGC CGGCGCGCGC CGCACGCTCA TCGCCAACCA GGTGGTGAGC GACGAAGACC TGGCCGGCAT CCAGCTGCTG CTGCACGCGC ACGCCGACTT GCGCGTGGTG TTCCTGGTCG ATTCGCTCGC GCAGCTCGCA TTGATCGAGG ACTGGTCCAA GCGCCATCCC GAGAGCGTGC CTTTCGAGGT GATGCTGGAG ATCGGTGTGG AGGGCGCACG CACCGGCTGC CGCACGCATG AGGAAGCCGT GGCGCTTGCC ACGCGGCTGC GTGCCAGCGA TGCGGCCAAG CTCGTGGGCA TCGAAACCTA CGAAGGGCAG GGCGCCACGG GTTCCAGCGA AGCCGACGCG GCCTACGCCA GCGCGCTGAT GGACCGCGTG GAAGCCATCG CGCGCCATTG CGACACGCAG CAATTGTTCG AGACCGACGA GGTGCTGGTC TCGGCCGGCG GCTCGGCCAT CTTCGACCTG GTGGCGGGGC GCCTGAAGCC CGCGCTGGGT TCGCCGGTGC GCGGCCTGCT GCGCTCGGGC TGCTATGTGA CGCACGACCA CGGCTTCTAC AAGCGCATGG TGAGCGCGGT GGACGAGCGC CTGGGCTGCG ATTGCGGCGA GAGCCTGCGC CCCGCGATGG AGGTGTGGGC CACGGTGCAG TCGCGGCCCG AGCCCGGCCT GGCGATCCTG GCCGTGGGCA AGCGCGACAT TTCCTTCGAC CTGTCGATGC CGGTGCCCAT CGCACGCGCC GCACGCGGCA TGCTCGAAGC GCAGGCGGTG CCCGCCGGCT GGAAGATCAC CGCGCTCAAC GACCAGCACG CCTACCTGCG CTGGGACGCC GCCGAAGAGG CGCAGGCCCC CGTGGTCGGC GACCGCGTGG GCCTGGGCAT CTCGCACCCC TGCACCACCT TCGACAAATG GCACTGGATG CCGGTGGTCG AAGAGAACTA CCGCGTGAGC GACGCCGTCG CCATGCATTT CTGA
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Protein sequence | MNTMTDTTAD PEFNDPLLGS NFKGYPRTQP PRRRSEVGAA GWNVLAGDLP LPLAVLKREA LEHNLAWMQS RVRAWGIDLA PHGKTTMSPQ LFRRQLDAGA WGLTFATVTQ LAVGVAAGAR RTLIANQVVS DEDLAGIQLL LHAHADLRVV FLVDSLAQLA LIEDWSKRHP ESVPFEVMLE IGVEGARTGC RTHEEAVALA TRLRASDAAK LVGIETYEGQ GATGSSEADA AYASALMDRV EAIARHCDTQ QLFETDEVLV SAGGSAIFDL VAGRLKPALG SPVRGLLRSG CYVTHDHGFY KRMVSAVDER LGCDCGESLR PAMEVWATVQ SRPEPGLAIL AVGKRDISFD LSMPVPIARA ARGMLEAQAV PAGWKITALN DQHAYLRWDA AEEAQAPVVG DRVGLGISHP CTTFDKWHWM PVVEENYRVS DAVAMHF
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