Gene Vapar_1219 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1219 
Symbol 
ID7973389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1332030 
End bp1333343 
Gene Length1314 bp 
Protein Length437 aa 
Translation table11 
GC content70% 
IMG OID644791816 
Productalanine racemase domain protein 
Protein accessionYP_002943136 
Protein GI239814226 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3616] Predicted amino acid aldolase or racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACCA TGACCGACAC CACCGCCGAC CCGGAATTCA ACGACCCGCT GCTGGGCAGC 
AACTTCAAGG GCTACCCGCG CACCCAGCCG CCGCGCCGCC GCAGCGAAGT CGGCGCCGCG
GGATGGAACG TGCTCGCGGG CGACCTGCCG CTGCCGCTGG CCGTACTCAA GCGCGAGGCG
CTCGAGCACA ACCTGGCCTG GATGCAGTCG CGCGTACGCG CCTGGGGCAT CGACCTGGCG
CCGCACGGCA AGACCACCAT GTCGCCGCAG CTCTTCCGGC GCCAGCTCGA CGCCGGCGCC
TGGGGCCTGA CCTTCGCCAC CGTCACGCAG CTGGCGGTGG GCGTGGCCGC CGGCGCGCGC
CGCACGCTCA TCGCCAACCA GGTGGTGAGC GACGAAGACC TGGCCGGCAT CCAGCTGCTG
CTGCACGCGC ACGCCGACTT GCGCGTGGTG TTCCTGGTCG ATTCGCTCGC GCAGCTCGCA
TTGATCGAGG ACTGGTCCAA GCGCCATCCC GAGAGCGTGC CTTTCGAGGT GATGCTGGAG
ATCGGTGTGG AGGGCGCACG CACCGGCTGC CGCACGCATG AGGAAGCCGT GGCGCTTGCC
ACGCGGCTGC GTGCCAGCGA TGCGGCCAAG CTCGTGGGCA TCGAAACCTA CGAAGGGCAG
GGCGCCACGG GTTCCAGCGA AGCCGACGCG GCCTACGCCA GCGCGCTGAT GGACCGCGTG
GAAGCCATCG CGCGCCATTG CGACACGCAG CAATTGTTCG AGACCGACGA GGTGCTGGTC
TCGGCCGGCG GCTCGGCCAT CTTCGACCTG GTGGCGGGGC GCCTGAAGCC CGCGCTGGGT
TCGCCGGTGC GCGGCCTGCT GCGCTCGGGC TGCTATGTGA CGCACGACCA CGGCTTCTAC
AAGCGCATGG TGAGCGCGGT GGACGAGCGC CTGGGCTGCG ATTGCGGCGA GAGCCTGCGC
CCCGCGATGG AGGTGTGGGC CACGGTGCAG TCGCGGCCCG AGCCCGGCCT GGCGATCCTG
GCCGTGGGCA AGCGCGACAT TTCCTTCGAC CTGTCGATGC CGGTGCCCAT CGCACGCGCC
GCACGCGGCA TGCTCGAAGC GCAGGCGGTG CCCGCCGGCT GGAAGATCAC CGCGCTCAAC
GACCAGCACG CCTACCTGCG CTGGGACGCC GCCGAAGAGG CGCAGGCCCC CGTGGTCGGC
GACCGCGTGG GCCTGGGCAT CTCGCACCCC TGCACCACCT TCGACAAATG GCACTGGATG
CCGGTGGTCG AAGAGAACTA CCGCGTGAGC GACGCCGTCG CCATGCATTT CTGA
 
Protein sequence
MNTMTDTTAD PEFNDPLLGS NFKGYPRTQP PRRRSEVGAA GWNVLAGDLP LPLAVLKREA 
LEHNLAWMQS RVRAWGIDLA PHGKTTMSPQ LFRRQLDAGA WGLTFATVTQ LAVGVAAGAR
RTLIANQVVS DEDLAGIQLL LHAHADLRVV FLVDSLAQLA LIEDWSKRHP ESVPFEVMLE
IGVEGARTGC RTHEEAVALA TRLRASDAAK LVGIETYEGQ GATGSSEADA AYASALMDRV
EAIARHCDTQ QLFETDEVLV SAGGSAIFDL VAGRLKPALG SPVRGLLRSG CYVTHDHGFY
KRMVSAVDER LGCDCGESLR PAMEVWATVQ SRPEPGLAIL AVGKRDISFD LSMPVPIARA
ARGMLEAQAV PAGWKITALN DQHAYLRWDA AEEAQAPVVG DRVGLGISHP CTTFDKWHWM
PVVEENYRVS DAVAMHF