| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1214 |
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| Symbol | |
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| ID | 7973384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1326478 |
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| End bp | 1328052 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791811 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002943131 |
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| Protein GI | 239814221 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02019] bacteriochlorophyll 4-vinyl reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTCACG CCGGTCTTGT CCAGTGCCTG CCGAAGCTGT CGAAACGCAG CCTGCTGGCT
GCCTCCCTGC TCGCCATGCT GTGTGCCGCG CTGCCTTCCC AGCCTGCGCA TGCCCAGGGG
CCGCGCAACT TTGCCACGCT GGCCATGGTG GCCGAACCGC AGACGCTCGA CCCGATGGCG
TCCACGGCCG ACCTGGTCGG AACCATCATG CAGCACGTGT ACGAGACGCT CTACACCTTC
GACGCCAAGT GGAACGTGGT GCCGATGCTG GCCGAGAGCA GCCCCAGGAT CTCGGCCGAC
GGCAAGACCT ACGCGATCAC GCTGCGCAAG GGCGTGATGC TGCACAACGG CCGCGAACTC
AACGCCGACG ACGTGGTGGC CAGCCTGCAG CGCTGGATGG ACCAGTCGCC GCGCGGCAAG
GCCGTGGGCA AGGAAGTCGA GAGCCTCAAG GCCAAGGGCC CGCTGGGCGT GGAGATCGTG
CTGAAGGCGC CGTATGCGCC ACTGCTCTCG CAGCTCGCGC TGCCCAGCGG CATGGCCGCC
ATCATGGCGA AGGATTCCAT CGCTTCGCCG CTCAAGGATT TCGTCGGCAC CGGCCCCTAC
AAGTTCAAGG AGCGCCGCCC CGACCAGTTC GTGCTGCTCA CGCGCTTCGA CAAGTACGCG
GCGCGCAAGG AACCCGCGAG CGGCTACGGC GGCAAGCGCG AGGCGGCCAT CGAGGAGCTG
CGCTTCGTGC CGGTGCCCAA TGCCAGCACG CGCGTGGAAG GCGCACTGGC CGGCCAGTAC
GACTTTGCCG ACCTGCTGCC GGTCGAAGCG CTGCCGCGCC TGGAGAAGTC GGGCGGCAAG
ACCGTGCCGA TCATGACGCC GTCGTTCGGC TTTCCGTACC TGGTGCTCAA CACCAAGGAA
GGCGTGGCTT CCAACCAGGC CGTGCGCCAG GCGATCCAGT CGGCGCTCGG CGAGGGCGAG
ATGCTCGCCG CGGGCTTTGG CGACACGCGC TTTTTCGTGG CCGAAGGCAA CCACTTTCCC
AAGGGCTCGC CGTTCTATTC GACCGCGGGC ACCACGCTCT ACAACGAGCG CAACGCCGCC
AAGGCCAAGG AGGCCGCGGC CAAGGCCGGC TACAAGGGCG AGCCGATCCG CGTGCTCACC
AGCCGCCAGT ACGACTTTCA CTACAACATG TCGCTCCTGA TGGCCGAGCA GCTCAAGCGC
GCCGGCTTCA AGGTCGACCT CAACGTGGTC GACTGGGCCA CGCTGGTGCA GCGCCGCAAC
GACCCGAAGC TGTGGGACAT CTACGTGACC CATTCGGGCC AGTTCCCCGA GCCGATGCTC
TCGCCGCCGC AGCTGGGCGA CGGCGCGCCG GGCTGGTGGG ACTCGCCCGC CAAGAAGTCG
GCGCTGCAGG CCTTCAACGT CGAGAGCGAT CCGGCCAAGC GCGGCGCGCT GTGGGGCAAG
GTGCAGCAGG TGGTCTATGA AGAAGTGCCG TACATCAACG TCGGCAAGTT CAACGGCCTC
TCGGCCAAGA GTCCGGCGCT GGACAACTAC CAGCCCGCGA CCTGGCCGTT CTTCTGGAAC
GCAAGGATCA AGTAA
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| Protein sequence | MSHAGLVQCL PKLSKRSLLA ASLLAMLCAA LPSQPAHAQG PRNFATLAMV AEPQTLDPMA
STADLVGTIM QHVYETLYTF DAKWNVVPML AESSPRISAD GKTYAITLRK GVMLHNGREL
NADDVVASLQ RWMDQSPRGK AVGKEVESLK AKGPLGVEIV LKAPYAPLLS QLALPSGMAA
IMAKDSIASP LKDFVGTGPY KFKERRPDQF VLLTRFDKYA ARKEPASGYG GKREAAIEEL
RFVPVPNAST RVEGALAGQY DFADLLPVEA LPRLEKSGGK TVPIMTPSFG FPYLVLNTKE
GVASNQAVRQ AIQSALGEGE MLAAGFGDTR FFVAEGNHFP KGSPFYSTAG TTLYNERNAA
KAKEAAAKAG YKGEPIRVLT SRQYDFHYNM SLLMAEQLKR AGFKVDLNVV DWATLVQRRN
DPKLWDIYVT HSGQFPEPML SPPQLGDGAP GWWDSPAKKS ALQAFNVESD PAKRGALWGK
VQQVVYEEVP YINVGKFNGL SAKSPALDNY QPATWPFFWN ARIK
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