| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1202 |
|---|
| Symbol | |
|---|
| ID | 7973371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1315681 |
|---|
| End bp | 1316454 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644791798 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_002943119 |
|---|
| Protein GI | 239814209 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA GCATTTCTGG CTGGCTCGCG GTTGTGGGCC TGGCCTTGGG CCTGACCTTT
TCCGCAGCCG CATCGGCCGA GTCCGGCGGC ATGGCCTGGG ACAAGGCGCC CAACAAGACC
ACCGACGTCG CCTCGCTGCA GAACGGCGCC AAGCTGTTCG TCAACTACTG CCTGAACTGC
CACTCCGCGG CGTTCATGCG CTACAACCGG CTGCAGGACA TCGGCATCAC CGAGCAGCAG
ATCAAGGACA ACCTCCTGTT CGCGACCGAC AAGGTCGGCG AGACCATGAA GGCCAACATC
GACGCGCGCC AGGCCAAGGA ATGGTTCGGC ACGACGCCGC CCGACCTGAC CCTGGTGGCC
CGCTCGCGCG CCGGCCATGG CGGCACGGGT GCGGACTACC TGTACACCTA CCTGCGTACC
TACTACCGCG ACGACACCAA GGCCACCGGC TGGAACAACC TGCTGTTCCC GAGCGTTGCC
ATGCCCAACC CGCTGTGGGA GCTGCAGGGC GAACGCCGTC CCGTCTACAC CAAGATCTCG
CAGCATGGCC ACGAGACCGA AGTGTTCAAG GGCTGGGAGC AGGTGACCCC CGGCACCATG
ACGCCGCTGC AGTTCGACAC TGCGGTCGGC GACCTGGTGA GCTACCTGCA ATGGATGGCC
GAGCCGGCAC AGAACACGCG CATCCGCATC GGTGTGTGGG TGCTGCTGTT CCTCGTCATG
TCGTTGGTCT TCGTGTGGCG ACTGAACGCC TCGTACTGGA AAGACGTCAA GTAG
|
|---|
| Protein sequence | MKKSISGWLA VVGLALGLTF SAAASAESGG MAWDKAPNKT TDVASLQNGA KLFVNYCLNC
HSAAFMRYNR LQDIGITEQQ IKDNLLFATD KVGETMKANI DARQAKEWFG TTPPDLTLVA
RSRAGHGGTG ADYLYTYLRT YYRDDTKATG WNNLLFPSVA MPNPLWELQG ERRPVYTKIS
QHGHETEVFK GWEQVTPGTM TPLQFDTAVG DLVSYLQWMA EPAQNTRIRI GVWVLLFLVM
SLVFVWRLNA SYWKDVK
|
|---|
| |