Gene Vapar_1200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1200 
Symbol 
ID7973369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1313583 
End bp1314200 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content67% 
IMG OID644791796 
Productubiquinol-cytochrome c reductase, iron-sulfur subunit 
Protein accessionYP_002943117 
Protein GI239814207 
COG category[C] Energy production and conversion 
COG ID[COG0723] Rieske Fe-S protein 
TIGRFAM ID[TIGR01416] ubiquinol-cytochrome c reductase, iron-sulfur subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.429419 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACA TGACCTCCGG CTCCCCCCGG ATCGACACAA GCAAGCGGAC GTGGTTAATC 
GCATCCAGCT GTGCCGGCGT AGCGGGAGGC GTGGCCACCG CGATTCCCTT TGTGAGTACG
TTCCAGCCCT CCGAGAAGGC CAAGGCCGCG GGCGCTGCCG TCGAAGTCGA CATCGGCGGC
CTCAAGGTCG GCGAGAAGAT CACCGTCGAG TGGCGCGGCA AGCCCGTCTG GATCCTCAAG
CGCTCGCCCG AGCAAGTGGC CGAGCTCCCC AAGCTCGACG GCCAGCTGGC CGATCCGCTC
TCCAAGCGGC ACCCCGACGA ATTCACCCCC AAGTACGCGC AGAACGAGCA CCGCTCGATC
AAGCCCGACG TGCTGGTGGT GGTGGGCATC TGCACCCACC TGGGCTGCTC GCCGACCGAC
CGCTTCCAGG CCGGCCCGCA GCCTTCGCTG CCCAGCGACT GGGAAGGCGG CTTCCTCTGC
CCCTGCCACG GTTCCACGTT CGACCTGGCC GGCCGCGTCT TCAAGAACAA GCCCGCGCCC
GACAACCTGC CTGTGCCGCC GCACATGTAC CTGTCGGACA CCAAGCTCCT GATCGGTGAA
GACTCCAAGA AGGCCTGA
 
Protein sequence
MSDMTSGSPR IDTSKRTWLI ASSCAGVAGG VATAIPFVST FQPSEKAKAA GAAVEVDIGG 
LKVGEKITVE WRGKPVWILK RSPEQVAELP KLDGQLADPL SKRHPDEFTP KYAQNEHRSI
KPDVLVVVGI CTHLGCSPTD RFQAGPQPSL PSDWEGGFLC PCHGSTFDLA GRVFKNKPAP
DNLPVPPHMY LSDTKLLIGE DSKKA