| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1197 |
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| Symbol | |
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| ID | 7973366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1309153 |
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| End bp | 1312248 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791793 |
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| Product | protein of unknown function DUF940 membrane lipoprotein putative |
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| Protein accession | YP_002943114 |
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| Protein GI | 239814204 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0938466 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGTT CGCTCCTGCG TGGCTTCGGC AGACATCCCT GGCCTCTTCG CGCGGCGGTG
GCCTGCGCAT TGGCGGCGAG TTGCGCCGCC GGCGCGCAGC CCCTGGGCAA CAGCCCCGTC
GACAACAAAA CACCCGCCGA CGACGCCGAC ATCCGTCCCG GCGAGCGGCT GAGCGCCTGG
CTGCTGCGCC AGCCGGCCGA AACGGCTTCC CCCGGATTGG CATGGCGCAT CCCACAGGAG
CGCCTGGCGC AGCAGTTCCT GAAGAACACG CTGCTGCTGC GGCTCGATGC CGCCAGCCGG
CGCGTGCCGC CGGAAGAGCA GGGTCGGCGC AAGCAGTTGA TGGCTTGGCT GCAGGGCCTG
CCGGTGACCG GCCGCGTCGC GCTCGGCATC GTCGATCCGC GCTGGCTGCA GGCGCACCCG
GAAGAAGATC CGGTGCTGAC GGCCGGCCAG CAGCTGGTGG CGCCGCCGCC AGCGCTGAAG
ACCATCTCGG TCCTGCAGCC CGATGGGCAG CTTTGCCAGG TGGCCCATGA ACCCGGCCGC
ACGGCGTGGG ACTATGTCGC CGCCTGCAGC CCCGAGGGCA AGCACGATTG GGCCTGGGTC
GCCCAGCCCG ACGGGCGCAC CGCCCGCGTG GGCGTAGCGC CCTGGAATGC GCATCCCTCG
AGCGAGCCGG CGCCGGGCGC ATGGGTCTGG GCCGCGCCGC GCGGCATGGA CGACCTGGAG
GCGATCTCCG AGGGCATCAT CAAGTTTCTG GCCACGCAAG GGCCTTCGCC GCAAGGCGGC
GCGATGCTGC AGCCTTCGGC GGGTGCGGCC GCACCGGCCG CCGCCATCGC CGCACCCGCT
GCACCGCCCG CCCTGCCTGC CTTGCCCGAC GTGCCGCCGG CACCTGCCGC GCCGGCGCCA
TCGACGGCCA TTTCCGTGCG TCCCGAAGCA GCACCGCAAT ACCGCGCGCT CCAGACGAGC
GGCAACGACT GGGGCGAGAC CGGCCTGCTG CAGACGCCCA CGGCGCGCAT GGGCCAGGCG
GGCGACATGC GGACCTCGCT CGCGCACGTC TCGCCCTACA CGCGGCTGAA CGTCATGTTC
CAGCCGCTGG ATTGGCTGGA AGCGGGCTTT CGCTACACCT CCATCAGCAA CCGGATCTAC
GGCGTCGGTC TCAGCAACCA GGGCTACAAG GACAAGAGCA TCGACCTGAA GGCGCGGCTG
TGGAAGGAGT CGGCCTACCT GCCCGAGGTG GCGCTGGGCT TTCGCGACAT CGGCGGCACC
GGCCTCTTTT CGTCCGAGTA CCTGGTGGCC AGCAAGCGCC ACGGCGACCT GGATTTCAGC
CTCGGCATCG GCTGGGGCTA CCTGGGGAGC AGCGGCAACA TCAGCAACCC CTTCGGCTTG
CTGAGCAGCC GCTTCAAGAC CCGCGTGAGC GAGACGACCT GGGGCGGCGC CAACTTCGGC
CGGCTCTTTC GCGGACCTGC CGCGCTCTTT GGCGGCGTGC AATGGCGCAC GCCCTGGGAC
CCGCTGACGC TCAAGCTCGA ATACGACGGC AACGACTACA AGAACGAGCC GCTCAACAAC
CCCCAGCGGC AGCGCTCCCC GTTCAACATC GGCCTGGAGT ACCGCTACTC CCCCGGCGTG
ATTTTCTCGG CCGGCTTCGA ACGCGGCAAC AAGGTGATGC TGGGCCTCAC GCTGCAGACC
AACCTGGCCA CCCTGCAGAT GCCCAAGGCG GCAGACCCGC CGGCGCCGAG CTTCTCGCCG
GACCCGCCGG CCGCCTCGCC GGGCTGGGCC GCCACCGCGG CCGACATCGA AAGCCGCACG
GACTGGACCA TCCAGCGCAT CGCACCGCAA GGCCAGATGC TGCATGTGTG GATCACCGAA
AGCGCCACCG TCTACCGGGA TGTGCGGGTC GAGAAGATCA TTGCCGTGCT GCATCGCGAT
GCGCCGGCCT CGATCAAGAA CTTCGTGCTC CATTACTCGG AGCGGGGCCT GCCGATGCAC
GCGCAAGTGG TCAACCGCAA TGAATGGGTG ACCGCGCACT ACCAGGCACA GACGCCCGGC
GAGGTTCGCG CGGCCAGCCA GCGCGACTAT GCGCCCCCGC CCGTGGGCTC GGGCGATCCG
GCCACCTTCG TTCCGCCGGG CAGCAGCGCC AACACTGCGG CCGCATCCGC AGATGCCTCT
TCCGCCACGG CCGACAACAA GGCCCTTGGC CCGTGGGAGC GCCGCAGCGA CAAGTTCAGC
ATCGGCCTCA CGCCCAGCCT CGGCCAGATC CTCGGCGGGC CCAACGCATT CGTGCTCTAC
CAGATCGGCG TGCAGGCGGT GGCGGAATAC CGCTTCACGC CCAGCACCTG GGTCAACGGC
GCGCTGAACC TGCGCATGGT CGACAACTTC GACAAGTTCA CCTACACGGC GGGCAGCAAC
CTGCCCCGCG TGCGAACCCT GCAGCGCGAG TACGTCACCG CCAGGCGCCT GACCATGCCG
GTGCTCCAGC TGACGCACGT CGGCAGGCTC TCCGACAACC AGTACTACAG CGTGTACGGC
GGTGCCCTGG AAACCATGTA TGCGGGCGTC GGCGGTGAAT GGCTCTACCG GCCATGGCGC
AGCCGGATCG CCTTCGGGGT CGACTTCAAC CACGTGCGCC AGCGCGACTT CGAACAGGAC
TTCGGCCTGC GCGACTACAA GGTGAACACC GGCCACGCCA CGCTCTACTG GGACACCGGC
TGGCACGGCG TGCTGGCCAA GATCAGCGCG GGCCAGTACC TGGCGGGCGA CCGCGGCGTC
ACCATCGACA TCAGCCGCCG CTTCGACAAC GGCGTGGTGC TCGGGGCCTA CGCCACCAAG
ACCAACGTAT CGGCCAGGCA GTTCGGCGAA GGCAGCTTCG ACAAGGGCAT CTATCTTTCC
ATTCCCTTCG ACGCATTGCT GCCGCGTTCG AACAAGTTCA CCGCCAACTT CGCCTGGGCG
CCGCTGGTGC GCGACGGCGG TGCGCGGCTC GGCCGGATCC ATCCGCTCTA CGAGATGACC
TCGGCCCGCG ACCCGAGCGC CTACAAGTTC GCGCCGCCGG ACAGCGGCAC GCCGGGCACG
GGCGACAACA TCCTGAACTT CGAACGGCCG CGCTGA
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| Protein sequence | MSSSLLRGFG RHPWPLRAAV ACALAASCAA GAQPLGNSPV DNKTPADDAD IRPGERLSAW
LLRQPAETAS PGLAWRIPQE RLAQQFLKNT LLLRLDAASR RVPPEEQGRR KQLMAWLQGL
PVTGRVALGI VDPRWLQAHP EEDPVLTAGQ QLVAPPPALK TISVLQPDGQ LCQVAHEPGR
TAWDYVAACS PEGKHDWAWV AQPDGRTARV GVAPWNAHPS SEPAPGAWVW AAPRGMDDLE
AISEGIIKFL ATQGPSPQGG AMLQPSAGAA APAAAIAAPA APPALPALPD VPPAPAAPAP
STAISVRPEA APQYRALQTS GNDWGETGLL QTPTARMGQA GDMRTSLAHV SPYTRLNVMF
QPLDWLEAGF RYTSISNRIY GVGLSNQGYK DKSIDLKARL WKESAYLPEV ALGFRDIGGT
GLFSSEYLVA SKRHGDLDFS LGIGWGYLGS SGNISNPFGL LSSRFKTRVS ETTWGGANFG
RLFRGPAALF GGVQWRTPWD PLTLKLEYDG NDYKNEPLNN PQRQRSPFNI GLEYRYSPGV
IFSAGFERGN KVMLGLTLQT NLATLQMPKA ADPPAPSFSP DPPAASPGWA ATAADIESRT
DWTIQRIAPQ GQMLHVWITE SATVYRDVRV EKIIAVLHRD APASIKNFVL HYSERGLPMH
AQVVNRNEWV TAHYQAQTPG EVRAASQRDY APPPVGSGDP ATFVPPGSSA NTAAASADAS
SATADNKALG PWERRSDKFS IGLTPSLGQI LGGPNAFVLY QIGVQAVAEY RFTPSTWVNG
ALNLRMVDNF DKFTYTAGSN LPRVRTLQRE YVTARRLTMP VLQLTHVGRL SDNQYYSVYG
GALETMYAGV GGEWLYRPWR SRIAFGVDFN HVRQRDFEQD FGLRDYKVNT GHATLYWDTG
WHGVLAKISA GQYLAGDRGV TIDISRRFDN GVVLGAYATK TNVSARQFGE GSFDKGIYLS
IPFDALLPRS NKFTANFAWA PLVRDGGARL GRIHPLYEMT SARDPSAYKF APPDSGTPGT
GDNILNFERP R
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