Gene Vapar_1191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1191 
Symbol 
ID7973360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1300992 
End bp1303244 
Gene Length2253 bp 
Protein Length750 aa 
Translation table11 
GC content63% 
IMG OID644791787 
Productexopolysaccharide transport protein family 
Protein accessionYP_002943108 
Protein GI239814198 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR01005] exopolysaccharide transport protein family
[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.113829 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCAC CCCAGCAAGC CGCCCTGCCG ATGCCCGCGC TGGAAGAGGA GAACGACGGG 
TTCAAACTCG TCGAGTACCT GGACATCCTG ATCGACCACC GGTGGTTCAT TGCCATCGTG
GTTGCCGTGG CCCTGCTGCT TGGCATGGCC TACGCCCTTT TCGGGCAGCC GATGTACGAA
ACCAATGTGG CCGTGCAGGT CGAGGACTCG GGCAATTCGG CAGGCAGCTT CCTGGGCGAT
GCGGCGTCGT CGCTGCTGAG CGTGAAGACG CCGGCCGCCG GCGAGATCGA GATCATCAAG
TCGCGCGCCA TCCTCGGCCA GGCGGTGGAG AACACCAAGC TATACATCAG CGCGCAGCCG
CGCTATGCAC CCATCGTGGG CAGCTGGCTC GCGCGGCGCG CCACCGAGCT GTCGAACCCG
GGCTTCATGG GGCTTTCCGG CTACGTGACG GGGGCCGAGG CGATCATGGT TCCGCAATTC
GACGTCCCCG CGGATCTCGA AGCGAAGCCG TTCATGCTGA CCCTCGGGCC GGACAACCGC
TACGAACTGC TCGTTCCCAA CGTCGACACG CCGCTCAAGG GCACCGTCGG AACCCCGCTC
GTGGCCAACG TTCCGGGCGG CAGCCTCCGG CTGCTGGTCA GCTCCATCAG TGCCAAGCCC
GGCGCGCAGT TCCAGCTGGC CCGCAACTCC AGGCAACTGG CGCTGCTGTC GCTGCAGGAC
AACCTCAAGG TCGTCGAGAA AGGCAAGCAG TCCGGCGTTC TCGACGTCAG CCTGAAAAGC
CCGGATCCGG AAAAGCTGAC GCAGCTGCTC AATGAAATCG GGCGGCTCTA TGTGCGCCAG
AACATCGAGC GCAAGGCTGC CGAGGCCGAG AAGACCCTGG GCTTCCTGGA CACCGCGCTG
CCGCAGTTCA AGAAGCAGCT CGAGCAGTCC GAAGACCTCT ACAACCGCTA TCGAAACGAG
AACGGCACCG TCAGCCTCGA CGACGAGGCC AAGAATGCGC TGGCCCAGAC GGTCGACCTG
CAGTCCAAGC TGCTCGAAGC CGAACAGAAG CGGCGGGAGC TTTCGGCGCG CTTCACCGAC
AAGCACCCGA ATCTCCAGAC GCTGGACGCG CAGATTTCGG CCTGGCGGAG CCAGATCTCG
GCGGTCGATT CGCGCATCCG CAAGATGCCG CTGCTGCAGC AGAACACCGT TCAGATGCAG
CGCGACATCA AGGTCAACAC CGACCTCTAC GTGTCGCTCC TGAACAGCTC GCTGCAGATG
CGGCTGGCCA AGGAAGGCAA GGTCGGCAAC GTGCGCCTGC TGGACGACGC CATCATTCCC
GAGGAGCCCG TCTGGCCCAA GCGGCCGCTG ATCATCGCCC TGGCGCTGCT GCTGGGCCTG
GGGGCCGGCG TCGTGCTCGC CATTGCCAAG AACTCGCTGT TCGGCGGCAT CCGCAATCCG
AGCGAGATCG AGATGCACAC GGGCCTCAAC GTGTACAGCA GCATCCCGTT GAGCCCGGCC
CAGCGCACGA TCGACAAGAA CATCGAGAGC AGGGCGCCGG GAATGCACAT TCTCGCGCTC
CAGCAATCGG AGGATCCCGC GGTCGAAAGC CTGCGCAGCC TGCGGACCGC ATTGCAGTTC
GCCATGCTGG AGGCGCCCAA CAACCGCCTG CTCATCTCCG GCGCGACGCC GGGAGTCGGG
AAGACCTTCG TCTCGGTCAA CTTCGCGGCC ATCACCGCTG CGTCAGGAAA GAAGGTCCTG
CTGATCGACG CCGACCTGCG CAAGGGCCGG GTCAACCAGT TCTTCTCCCT TTCGCGCTCG
TCCGGCCTTT CGGAATTGAT TGCCGGCACG CTCGGCTTCG AAAAAGCCAT TCGCTCGTCG
ATCCTGCCGA ATCTGGACGT CATGACGACC GGCATGCTGC CGCCCAATCC GGCCGAATTG
CTCATGAGCG ATTCTTTTTC CCAGATCCTG GAAAAGCTTT CGCCGGATTA CGACCTTGTG
ATTATCGATA CCGCGCCGGT GCTGGTGGCG GCGGACACCG CATCGGTGGC GCCGCTCGCA
GGCTCTCTTC TGCTCGTTGC CCGGGCCGAA AAGACGCACC TGGGCGAATT GAACGAAAGC
GTCAGAAGAC TGGCGCACGC GGGCTGCTCG GCCAATGGCG TAATTTTGAA TGCTATGGAC
TTATCCCGGC GCCATGCGGG CAGCAGCAGC TACAAATACG GTGGTTACCG TTACACACAC
TATAAATACA AAAACAACAG GGATACCACC TAG
 
Protein sequence
MNAPQQAALP MPALEEENDG FKLVEYLDIL IDHRWFIAIV VAVALLLGMA YALFGQPMYE 
TNVAVQVEDS GNSAGSFLGD AASSLLSVKT PAAGEIEIIK SRAILGQAVE NTKLYISAQP
RYAPIVGSWL ARRATELSNP GFMGLSGYVT GAEAIMVPQF DVPADLEAKP FMLTLGPDNR
YELLVPNVDT PLKGTVGTPL VANVPGGSLR LLVSSISAKP GAQFQLARNS RQLALLSLQD
NLKVVEKGKQ SGVLDVSLKS PDPEKLTQLL NEIGRLYVRQ NIERKAAEAE KTLGFLDTAL
PQFKKQLEQS EDLYNRYRNE NGTVSLDDEA KNALAQTVDL QSKLLEAEQK RRELSARFTD
KHPNLQTLDA QISAWRSQIS AVDSRIRKMP LLQQNTVQMQ RDIKVNTDLY VSLLNSSLQM
RLAKEGKVGN VRLLDDAIIP EEPVWPKRPL IIALALLLGL GAGVVLAIAK NSLFGGIRNP
SEIEMHTGLN VYSSIPLSPA QRTIDKNIES RAPGMHILAL QQSEDPAVES LRSLRTALQF
AMLEAPNNRL LISGATPGVG KTFVSVNFAA ITAASGKKVL LIDADLRKGR VNQFFSLSRS
SGLSELIAGT LGFEKAIRSS ILPNLDVMTT GMLPPNPAEL LMSDSFSQIL EKLSPDYDLV
IIDTAPVLVA ADTASVAPLA GSLLLVARAE KTHLGELNES VRRLAHAGCS ANGVILNAMD
LSRRHAGSSS YKYGGYRYTH YKYKNNRDTT