| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1189 |
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| Symbol | |
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| ID | 7973358 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1299380 |
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| End bp | 1300543 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791785 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_002943106 |
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| Protein GI | 239814196 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGATCA ATTTGACACG CTTCGTGAAC CCGAAGGGGT GGGGTTTTGC CCTAATGGGC
GCGTTATTGC TGCAGGGCTG CGCACCGGGC TTCAATTCCA TGGGCGCCTA CGAGGCGGAC
CAGAGCCTGC CGCCGGAGTT CCAGTACCTG CCGGCCGACG GTGCGCCGGA TGGCGTCATC
ACGTCCATCT CGCCGGCCTT GATCCGCACG ATGGCCGAGT CCCAGCCGGC CGCGGTTCCT
GCAGAGGTGA AAGCGCTCTT CGGCGAATCG CCGGTCTACA CCATCGGCCC GGGCGACGTC
GTGGGCGTGA TCGTCTATGA CCACCCGGAA CTGCTGCCGA ATGCCGGTGC GGTGATCACG
CAGCAGGCCG ACCCGACGGG CATCAGCGTG GCGCCCGGCT TCATCGTCGG CGCGGACGGG
CAGATCACCT TCCCCTACAT CGGCCGCGTC AAGCTCCAGG GGCTGACCGA GATCGAGGCC
TCCGACCTCA TTGCGGACCG CATCGCCACC TACATCAAGG CTCCGCAGGT CACGGTGCGC
ATCCAGTCCT TCCGAAGCCG GCGCGCCTTC GTCGAGGGCG AAGTGCGCAA CCCGGGGCTG
CAGATCTTCA CCGACGTGCC GATGACGCTG GCCGAAGCCC TGAGCCGGGC CGGCGGCATC
ACCGCCAATG GCGACCGCTC GTTCGTGACG CTCACGCGCG GCGACAAGAC CACGCTCATC
AACCTGCCCA ACCTGCAGGA CCTGGGCGCC GACGCCAGCA GGATTCCGCT GCGCAACGGC
GACGTGGTCC AGGTGCGGCA CCGCGACGAG AGCAAGGTGT TCGTGATGGG CGAAATTGCC
CGTCCGTCGG CGCTGCTCAT GCACAACGGG CGGCTCAGCC TCAACGAGGC GCTGGGCGAG
GCCGGCGGCC CCAACCTGAC TTCGGCCAAC ACGGGCCAGA TCTACGTCAT CCGCAACAAC
GCGCGGGGCT TGCCGGCCAT CTTCCACCTG AACGCCAGGA ACCCGGCGGC GCTGGGCCTG
GCCGAGCGCT TCCCGCTGCA GCCGCGCGAT GTCGTCTACA TCGATTCCGT GCCGCTGGTC
ACCTGGAACC GCCTGGCCAG CCTGATCCTG CCGGCTGCGC AAGTGATCAA TTCCGGCGAC
GAGGTCTGGA GCCGCCACAG ATGA
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| Protein sequence | MGINLTRFVN PKGWGFALMG ALLLQGCAPG FNSMGAYEAD QSLPPEFQYL PADGAPDGVI
TSISPALIRT MAESQPAAVP AEVKALFGES PVYTIGPGDV VGVIVYDHPE LLPNAGAVIT
QQADPTGISV APGFIVGADG QITFPYIGRV KLQGLTEIEA SDLIADRIAT YIKAPQVTVR
IQSFRSRRAF VEGEVRNPGL QIFTDVPMTL AEALSRAGGI TANGDRSFVT LTRGDKTTLI
NLPNLQDLGA DASRIPLRNG DVVQVRHRDE SKVFVMGEIA RPSALLMHNG RLSLNEALGE
AGGPNLTSAN TGQIYVIRNN ARGLPAIFHL NARNPAALGL AERFPLQPRD VVYIDSVPLV
TWNRLASLIL PAAQVINSGD EVWSRHR
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